miRNA display CGI


Results 121 - 140 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 90416 0.75 0.401118
Target:  5'- cGGCGAGGAgCgCGACGaGCACGCcCAUc -3'
miRNA:   3'- -CCGCUCUUgGaGCUGC-CGUGCGuGUA- -5'
29581 5' -56.5 NC_006151.1 + 90742 0.69 0.713325
Target:  5'- cGGCGGcgcCCUCGgggGCGGCGgGCACGg -3'
miRNA:   3'- -CCGCUcuuGGAGC---UGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 90772 0.68 0.790083
Target:  5'- uGGCGGGG---UCGGCGG-GCGCGCAg -3'
miRNA:   3'- -CCGCUCUuggAGCUGCCgUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 91562 0.75 0.41844
Target:  5'- aGCG-GGGCgaUGGCGGCGCGCGCGUg -3'
miRNA:   3'- cCGCuCUUGgaGCUGCCGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 93739 0.67 0.841943
Target:  5'- uGGUGGaugcGGGCCUCGuCGGgGCGCGgGg -3'
miRNA:   3'- -CCGCU----CUUGGAGCuGCCgUGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 94002 0.7 0.692249
Target:  5'- cGGCG-GAugGCCUCGucccgcaGCGccGCGCGCACGUa -3'
miRNA:   3'- -CCGCuCU--UGGAGC-------UGC--CGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 95277 0.66 0.872811
Target:  5'- uGGCGuuGACgaagaCGGCGGCgACGCGCGc -3'
miRNA:   3'- -CCGCucUUGga---GCUGCCG-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 95646 0.67 0.841943
Target:  5'- aGGCGcggucgucaaAGAGCguccaCUUGACGGCGCGCuCGc -3'
miRNA:   3'- -CCGC----------UCUUG-----GAGCUGCCGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 95959 0.69 0.723259
Target:  5'- aGCGAGAGCC-CGACGccgcCGCgGCGCAg -3'
miRNA:   3'- cCGCUCUUGGaGCUGCc---GUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 95989 0.67 0.825338
Target:  5'- aGGaUGGGGGCCaccucguccgUGAUGGCGCGCACc- -3'
miRNA:   3'- -CC-GCUCUUGGa---------GCUGCCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 96221 0.66 0.886974
Target:  5'- uGGCGGcGGCCgCGGCGagGCGCACAa -3'
miRNA:   3'- -CCGCUcUUGGaGCUGCcgUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 96455 0.69 0.752553
Target:  5'- aGGCGuccAGGuccGCCUCG-CGGCuccgcACGCGCAg -3'
miRNA:   3'- -CCGC---UCU---UGGAGCuGCCG-----UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 96656 0.68 0.790083
Target:  5'- cGGCGAGGGCCcgggCGACguccucggGGCAgGCgGCGUc -3'
miRNA:   3'- -CCGCUCUUGGa---GCUG--------CCGUgCG-UGUA- -5'
29581 5' -56.5 NC_006151.1 + 96719 0.66 0.865403
Target:  5'- cGGCGGcGGACgaggaGGCGGCGgGCGCGa -3'
miRNA:   3'- -CCGCU-CUUGgag--CUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 96851 0.74 0.445257
Target:  5'- gGGCGGGGaaaccgcgcccGCCgggCG-CGGCGCGCGCGg -3'
miRNA:   3'- -CCGCUCU-----------UGGa--GCuGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 97182 0.7 0.683144
Target:  5'- cGGCGcacGAcGCgCUCGACGGUgccgagGCGCACGUa -3'
miRNA:   3'- -CCGCu--CU-UG-GAGCUGCCG------UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 97277 0.7 0.672987
Target:  5'- gGGC-AGcGCCUCGGCGGCGgGCGu-- -3'
miRNA:   3'- -CCGcUCuUGGAGCUGCCGUgCGUgua -5'
29581 5' -56.5 NC_006151.1 + 97352 0.73 0.473008
Target:  5'- cGCGGGGaagGCCgcggCGGCGGCGgGCGCGg -3'
miRNA:   3'- cCGCUCU---UGGa---GCUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 98444 0.66 0.865403
Target:  5'- cGcCGAGAACCUgGcCGGcCugGCGCu- -3'
miRNA:   3'- cC-GCUCUUGGAgCuGCC-GugCGUGua -5'
29581 5' -56.5 NC_006151.1 + 98694 0.69 0.752553
Target:  5'- cGCGucgugcccccGGAGCa--GACGGCGCGCGCGc -3'
miRNA:   3'- cCGC----------UCUUGgagCUGCCGUGCGUGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.