Results 101 - 120 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 96221 | 0.66 | 0.886974 |
Target: 5'- uGGCGGcGGCCgCGGCGagGCGCACAa -3' miRNA: 3'- -CCGCUcUUGGaGCUGCcgUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 95989 | 0.67 | 0.825338 |
Target: 5'- aGGaUGGGGGCCaccucguccgUGAUGGCGCGCACc- -3' miRNA: 3'- -CC-GCUCUUGGa---------GCUGCCGUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 95959 | 0.69 | 0.723259 |
Target: 5'- aGCGAGAGCC-CGACGccgcCGCgGCGCAg -3' miRNA: 3'- cCGCUCUUGGaGCUGCc---GUG-CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 95646 | 0.67 | 0.841943 |
Target: 5'- aGGCGcggucgucaaAGAGCguccaCUUGACGGCGCGCuCGc -3' miRNA: 3'- -CCGC----------UCUUG-----GAGCUGCCGUGCGuGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 95277 | 0.66 | 0.872811 |
Target: 5'- uGGCGuuGACgaagaCGGCGGCgACGCGCGc -3' miRNA: 3'- -CCGCucUUGga---GCUGCCG-UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 94002 | 0.7 | 0.692249 |
Target: 5'- cGGCG-GAugGCCUCGucccgcaGCGccGCGCGCACGUa -3' miRNA: 3'- -CCGCuCU--UGGAGC-------UGC--CGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 93739 | 0.67 | 0.841943 |
Target: 5'- uGGUGGaugcGGGCCUCGuCGGgGCGCGgGg -3' miRNA: 3'- -CCGCU----CUUGGAGCuGCCgUGCGUgUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 91562 | 0.75 | 0.41844 |
Target: 5'- aGCG-GGGCgaUGGCGGCGCGCGCGUg -3' miRNA: 3'- cCGCuCUUGgaGCUGCCGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 90772 | 0.68 | 0.790083 |
Target: 5'- uGGCGGGG---UCGGCGG-GCGCGCAg -3' miRNA: 3'- -CCGCUCUuggAGCUGCCgUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 90742 | 0.69 | 0.713325 |
Target: 5'- cGGCGGcgcCCUCGgggGCGGCGgGCACGg -3' miRNA: 3'- -CCGCUcuuGGAGC---UGCCGUgCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 90416 | 0.75 | 0.401118 |
Target: 5'- cGGCGAGGAgCgCGACGaGCACGCcCAUc -3' miRNA: 3'- -CCGCUCUUgGaGCUGC-CGUGCGuGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 90050 | 0.66 | 0.89372 |
Target: 5'- gGGCGAu-GCCgaggCGcgccuCGGUGCGCACGUu -3' miRNA: 3'- -CCGCUcuUGGa---GCu----GCCGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 89952 | 0.67 | 0.80803 |
Target: 5'- gGGCGcggccaGGAACCgggCG-CGGCugGCgACGUa -3' miRNA: 3'- -CCGC------UCUUGGa--GCuGCCGugCG-UGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 88935 | 0.72 | 0.569934 |
Target: 5'- cGGCGGuagaagcGGACCUCGAaggucucccCGGCGCGCGgGa -3' miRNA: 3'- -CCGCU-------CUUGGAGCU---------GCCGUGCGUgUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 88256 | 0.69 | 0.733114 |
Target: 5'- cGGCGAagcCCUCGACGaaGCGCACc- -3' miRNA: 3'- -CCGCUcuuGGAGCUGCcgUGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 88214 | 0.77 | 0.300244 |
Target: 5'- aGGCGAGGcgcGCCUcCGGgGGCACGCAgAg -3' miRNA: 3'- -CCGCUCU---UGGA-GCUgCCGUGCGUgUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 87897 | 0.67 | 0.841943 |
Target: 5'- cGCGGGGcgucacggccccGCC-CGGCGGUaguagACGCACGUc -3' miRNA: 3'- cCGCUCU------------UGGaGCUGCCG-----UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 87349 | 0.66 | 0.87208 |
Target: 5'- gGGCcuccAGGGCCU-GGCGGCccccgucGCGCACGUc -3' miRNA: 3'- -CCGc---UCUUGGAgCUGCCG-------UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 86453 | 0.68 | 0.799132 |
Target: 5'- cGGCGAGGcCCcCGACGagacGCucuuuGCGCACGUg -3' miRNA: 3'- -CCGCUCUuGGaGCUGC----CG-----UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 86150 | 0.66 | 0.89372 |
Target: 5'- cGGCGGGGAgCUCG-CGcugACGCGCGa -3' miRNA: 3'- -CCGCUCUUgGAGCuGCcg-UGCGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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