miRNA display CGI


Results 101 - 120 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 135941 0.67 0.849963
Target:  5'- cGCGGGGAgccCCUCG-CGGCGCGgGaCGUc -3'
miRNA:   3'- cCGCUCUU---GGAGCuGCCGUGCgU-GUA- -5'
29581 5' -56.5 NC_006151.1 + 119762 0.67 0.849963
Target:  5'- uGGCGG--ACgUgGcCGGCGCGCGCAUn -3'
miRNA:   3'- -CCGCUcuUGgAgCuGCCGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 77606 0.67 0.849963
Target:  5'- cGGagcuGGACCUCuGCGGC-CGCGCGg -3'
miRNA:   3'- -CCgcu-CUUGGAGcUGCCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 20538 0.67 0.849963
Target:  5'- cGGCGu---CCUCGGCGGgguccacgACGCGCAg -3'
miRNA:   3'- -CCGCucuuGGAGCUGCCg-------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 134796 0.67 0.849963
Target:  5'- uGUGAG-GCCgCGGCGGCcCGCGCc- -3'
miRNA:   3'- cCGCUCuUGGaGCUGCCGuGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 733 0.66 0.865403
Target:  5'- gGGCGGGGGCUUCcgcuccGCGGCGCcCGCc- -3'
miRNA:   3'- -CCGCUCUUGGAGc-----UGCCGUGcGUGua -5'
29581 5' -56.5 NC_006151.1 + 27384 0.66 0.865403
Target:  5'- gGGCGAGAACggCGGggagGGCACGgGCu- -3'
miRNA:   3'- -CCGCUCUUGgaGCUg---CCGUGCgUGua -5'
29581 5' -56.5 NC_006151.1 + 28111 0.66 0.872811
Target:  5'- gGGCGcGGcuCCUCGuCGGCucgggGCGCGCu- -3'
miRNA:   3'- -CCGC-UCuuGGAGCuGCCG-----UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 3139 0.66 0.872811
Target:  5'- cGCGGGGcgcCCUCGGCGGgCucgGCGCAg -3'
miRNA:   3'- cCGCUCUu--GGAGCUGCC-Gug-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122613 0.66 0.872811
Target:  5'- aGGCGGugcGGGcCCUCGACcuguuCACGCACAa -3'
miRNA:   3'- -CCGCU---CUU-GGAGCUGcc---GUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 114096 0.66 0.872811
Target:  5'- gGGCuacuaccuGGGCCUCGGCGGCugcugccccACGUGCGc -3'
miRNA:   3'- -CCGcu------CUUGGAGCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 59151 0.66 0.872811
Target:  5'- gGGCGGGu-CCagGcCGGCGuCGCGCAg -3'
miRNA:   3'- -CCGCUCuuGGagCuGCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 87349 0.66 0.87208
Target:  5'- gGGCcuccAGGGCCU-GGCGGCccccgucGCGCACGUc -3'
miRNA:   3'- -CCGc---UCUUGGAgCUGCCG-------UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 137280 0.66 0.865403
Target:  5'- cGCGGGcACgCUCGagGCGGCcAUGCGCGg -3'
miRNA:   3'- cCGCUCuUG-GAGC--UGCCG-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 98444 0.66 0.865403
Target:  5'- cGcCGAGAACCUgGcCGGcCugGCGCu- -3'
miRNA:   3'- cC-GCUCUUGGAgCuGCC-GugCGUGua -5'
29581 5' -56.5 NC_006151.1 + 70944 0.66 0.865403
Target:  5'- cGGCGccu-UCUCGGCGGUGCGCGu-- -3'
miRNA:   3'- -CCGCucuuGGAGCUGCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 69608 0.66 0.865403
Target:  5'- cGGCGcaccagcgacAGGAUCUCGcgguCGGCGuccCGCGCGUg -3'
miRNA:   3'- -CCGC----------UCUUGGAGCu---GCCGU---GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 127389 0.66 0.865403
Target:  5'- uGGCGGGGGCCgcggccgagUCGACGGgaGCcCGCGg -3'
miRNA:   3'- -CCGCUCUUGG---------AGCUGCCg-UGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 96719 0.66 0.865403
Target:  5'- cGGCGGcGGACgaggaGGCGGCGgGCGCGa -3'
miRNA:   3'- -CCGCU-CUUGgag--CUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 72919 0.66 0.865403
Target:  5'- uGGCGAccGCCUCGGCGG-GCGUg--- -3'
miRNA:   3'- -CCGCUcuUGGAGCUGCCgUGCGugua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.