Results 121 - 140 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 53240 | 0.67 | 0.841943 |
Target: 5'- cGUGAGcagguUCUCGcUGGCGCGCACGc -3' miRNA: 3'- cCGCUCuu---GGAGCuGCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 103754 | 0.67 | 0.841943 |
Target: 5'- uGCGAGGAgCgCGccGCGGCGCuGCGCGa -3' miRNA: 3'- cCGCUCUUgGaGC--UGCCGUG-CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 11684 | 0.66 | 0.857785 |
Target: 5'- uGCGcccgacGGGGCCgcggGACGGCGCGUGCGg -3' miRNA: 3'- cCGC------UCUUGGag--CUGCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 104655 | 0.66 | 0.857785 |
Target: 5'- cGCGGccGCCgacGCGGCGCGCGCGc -3' miRNA: 3'- cCGCUcuUGGagcUGCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 114359 | 0.66 | 0.857785 |
Target: 5'- -uCGAGGACCcCGACgcgcagGGCGCGCuCAUg -3' miRNA: 3'- ccGCUCUUGGaGCUG------CCGUGCGuGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 87349 | 0.66 | 0.87208 |
Target: 5'- gGGCcuccAGGGCCU-GGCGGCccccgucGCGCACGUc -3' miRNA: 3'- -CCGc---UCUUGGAgCUGCCG-------UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 137280 | 0.66 | 0.865403 |
Target: 5'- cGCGGGcACgCUCGagGCGGCcAUGCGCGg -3' miRNA: 3'- cCGCUCuUG-GAGC--UGCCG-UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 98444 | 0.66 | 0.865403 |
Target: 5'- cGcCGAGAACCUgGcCGGcCugGCGCu- -3' miRNA: 3'- cC-GCUCUUGGAgCuGCC-GugCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 70944 | 0.66 | 0.865403 |
Target: 5'- cGGCGccu-UCUCGGCGGUGCGCGu-- -3' miRNA: 3'- -CCGCucuuGGAGCUGCCGUGCGUgua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 69608 | 0.66 | 0.865403 |
Target: 5'- cGGCGcaccagcgacAGGAUCUCGcgguCGGCGuccCGCGCGUg -3' miRNA: 3'- -CCGC----------UCUUGGAGCu---GCCGU---GCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 127389 | 0.66 | 0.865403 |
Target: 5'- uGGCGGGGGCCgcggccgagUCGACGGgaGCcCGCGg -3' miRNA: 3'- -CCGCUCUUGG---------AGCUGCCg-UGcGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 96719 | 0.66 | 0.865403 |
Target: 5'- cGGCGGcGGACgaggaGGCGGCGgGCGCGa -3' miRNA: 3'- -CCGCU-CUUGgag--CUGCCGUgCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 72919 | 0.66 | 0.865403 |
Target: 5'- uGGCGAccGCCUCGGCGG-GCGUg--- -3' miRNA: 3'- -CCGCUcuUGGAGCUGCCgUGCGugua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 27384 | 0.66 | 0.865403 |
Target: 5'- gGGCGAGAACggCGGggagGGCACGgGCu- -3' miRNA: 3'- -CCGCUCUUGgaGCUg---CCGUGCgUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 733 | 0.66 | 0.865403 |
Target: 5'- gGGCGGGGGCUUCcgcuccGCGGCGCcCGCc- -3' miRNA: 3'- -CCGCUCUUGGAGc-----UGCCGUGcGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 102511 | 0.66 | 0.865403 |
Target: 5'- cGGCGcGGGACCcCGGCGGCGucUACGa -3' miRNA: 3'- -CCGC-UCUUGGaGCUGCCGUgcGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 56937 | 0.66 | 0.86314 |
Target: 5'- cGGCG-GGGCgUCGcCGGCgcucagcgccucgaGCGCGCGg -3' miRNA: 3'- -CCGCuCUUGgAGCuGCCG--------------UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 84398 | 0.66 | 0.86314 |
Target: 5'- gGGCGGGGAgCggGugGGCgcggugauaaggcgGCGCGCGg -3' miRNA: 3'- -CCGCUCUUgGagCugCCG--------------UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 122666 | 0.66 | 0.857785 |
Target: 5'- cGCGAGcGCCgcgcCGA-GGUGCGCGCGg -3' miRNA: 3'- cCGCUCuUGGa---GCUgCCGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 66537 | 0.66 | 0.857785 |
Target: 5'- cGCGcu--CUUCGGgGGCGCGCGCGg -3' miRNA: 3'- cCGCucuuGGAGCUgCCGUGCGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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