Results 61 - 80 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29581 | 5' | -56.5 | NC_006151.1 | + | 102957 | 0.66 | 0.880003 |
Target: 5'- cGGCGcccGCCgcccaCGACGGCGCGCuGCu- -3' miRNA: 3'- -CCGCucuUGGa----GCUGCCGUGCG-UGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 85775 | 0.66 | 0.880003 |
Target: 5'- uGGCGcuGGAcgcGCaCUCGAUccGCGCGCGCGUg -3' miRNA: 3'- -CCGC--UCU---UG-GAGCUGc-CGUGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 28111 | 0.66 | 0.872811 |
Target: 5'- gGGCGcGGcuCCUCGuCGGCucgggGCGCGCu- -3' miRNA: 3'- -CCGC-UCuuGGAGCuGCCG-----UGCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 3139 | 0.66 | 0.872811 |
Target: 5'- cGCGGGGcgcCCUCGGCGGgCucgGCGCAg -3' miRNA: 3'- cCGCUCUu--GGAGCUGCC-Gug-CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 122613 | 0.66 | 0.872811 |
Target: 5'- aGGCGGugcGGGcCCUCGACcuguuCACGCACAa -3' miRNA: 3'- -CCGCU---CUU-GGAGCUGcc---GUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 114096 | 0.66 | 0.872811 |
Target: 5'- gGGCuacuaccuGGGCCUCGGCGGCugcugccccACGUGCGc -3' miRNA: 3'- -CCGcu------CUUGGAGCUGCCG---------UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 59151 | 0.66 | 0.872811 |
Target: 5'- gGGCGGGu-CCagGcCGGCGuCGCGCAg -3' miRNA: 3'- -CCGCUCuuGGagCuGCCGU-GCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 87349 | 0.66 | 0.87208 |
Target: 5'- gGGCcuccAGGGCCU-GGCGGCccccgucGCGCACGUc -3' miRNA: 3'- -CCGc---UCUUGGAgCUGCCG-------UGCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 137280 | 0.66 | 0.865403 |
Target: 5'- cGCGGGcACgCUCGagGCGGCcAUGCGCGg -3' miRNA: 3'- cCGCUCuUG-GAGC--UGCCG-UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 98444 | 0.66 | 0.865403 |
Target: 5'- cGcCGAGAACCUgGcCGGcCugGCGCu- -3' miRNA: 3'- cC-GCUCUUGGAgCuGCC-GugCGUGua -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 95277 | 0.66 | 0.872811 |
Target: 5'- uGGCGuuGACgaagaCGGCGGCgACGCGCGc -3' miRNA: 3'- -CCGCucUUGga---GCUGCCG-UGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 21566 | 0.66 | 0.872811 |
Target: 5'- cGGCGAGc-CCgcCGAgGGC-CGCGCGg -3' miRNA: 3'- -CCGCUCuuGGa-GCUgCCGuGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 50381 | 0.66 | 0.880003 |
Target: 5'- gGGCGAGAcgcggGCCcCG-CGGUccuCGCGCGg -3' miRNA: 3'- -CCGCUCU-----UGGaGCuGCCGu--GCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 21419 | 0.66 | 0.880003 |
Target: 5'- cGGCGucucGGGCCUCGGgGGuCGCG-GCGUg -3' miRNA: 3'- -CCGCu---CUUGGAGCUgCC-GUGCgUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 58423 | 0.66 | 0.879294 |
Target: 5'- gGGCGugcGGcagccacGCCUCGgugGCGuGCGCGCGCGc -3' miRNA: 3'- -CCGCu--CU-------UGGAGC---UGC-CGUGCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 139202 | 0.66 | 0.879294 |
Target: 5'- gGGCGcuGGAGCUccUGGCGGCGacgcugcCGCACAUc -3' miRNA: 3'- -CCGC--UCUUGGa-GCUGCCGU-------GCGUGUA- -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 57290 | 0.66 | 0.879294 |
Target: 5'- gGGCGuccAGcgcGGCCUUGGCGGCGCggccgaagccgcuGCGCGa -3' miRNA: 3'- -CCGC---UC---UUGGAGCUGCCGUG-------------CGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 104806 | 0.66 | 0.872811 |
Target: 5'- uGCGccgcGACCUggCGGCGGCGCGCgACGg -3' miRNA: 3'- cCGCuc--UUGGA--GCUGCCGUGCG-UGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 99360 | 0.66 | 0.872811 |
Target: 5'- cGGCGGu--CgUCGGCGGCGuCGUGCAc -3' miRNA: 3'- -CCGCUcuuGgAGCUGCCGU-GCGUGUa -5' |
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29581 | 5' | -56.5 | NC_006151.1 | + | 30250 | 0.66 | 0.872811 |
Target: 5'- cGGCGGGAGagaCGACgGGCGC-CACAg -3' miRNA: 3'- -CCGCUCUUggaGCUG-CCGUGcGUGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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