miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 81280 0.88 0.061581
Target:  5'- cGGCGGGGAUCUCGggcGCGGCGCGCGCGa -3'
miRNA:   3'- -CCGCUCUUGGAGC---UGCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 96221 0.66 0.886974
Target:  5'- uGGCGGcGGCCgCGGCGagGCGCACAa -3'
miRNA:   3'- -CCGCUcUUGGaGCUGCcgUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 68081 0.66 0.886974
Target:  5'- cGGCGGGcagcGCCUCGA-GGCuCGCGuCGc -3'
miRNA:   3'- -CCGCUCu---UGGAGCUgCCGuGCGU-GUa -5'
29581 5' -56.5 NC_006151.1 + 122928 0.66 0.886287
Target:  5'- cGGCGAcGAcgcggacGCCgaCGGCGGCGC-CGCGg -3'
miRNA:   3'- -CCGCU-CU-------UGGa-GCUGCCGUGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 85383 0.66 0.886287
Target:  5'- cGGCGcGAacgucggcGCCaacgaggUCGACGGCGCGgGCu- -3'
miRNA:   3'- -CCGCuCU--------UGG-------AGCUGCCGUGCgUGua -5'
29581 5' -56.5 NC_006151.1 + 109293 0.66 0.884906
Target:  5'- -cCGAGAucgagcggcccgccGCCUCGGCGGCA-GCAg-- -3'
miRNA:   3'- ccGCUCU--------------UGGAGCUGCCGUgCGUgua -5'
29581 5' -56.5 NC_006151.1 + 41469 0.66 0.880003
Target:  5'- cGGCGGGAcgAUgaCGACGGCgAC-CGCGUg -3'
miRNA:   3'- -CCGCUCU--UGgaGCUGCCG-UGcGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 104851 0.66 0.880003
Target:  5'- aGGCG-GAccagGCCgcggCGACGGaGCGCGCc- -3'
miRNA:   3'- -CCGCuCU----UGGa---GCUGCCgUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 102957 0.66 0.880003
Target:  5'- cGGCGcccGCCgcccaCGACGGCGCGCuGCu- -3'
miRNA:   3'- -CCGCucuUGGa----GCUGCCGUGCG-UGua -5'
29581 5' -56.5 NC_006151.1 + 101222 0.66 0.886974
Target:  5'- aGGCGuggacGGGGCCcggCGGgGGCAUGUGCGc -3'
miRNA:   3'- -CCGC-----UCUUGGa--GCUgCCGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 112466 0.66 0.886974
Target:  5'- aGCGAGGacGCCuUCGA-GGCGcCGUACAc -3'
miRNA:   3'- cCGCUCU--UGG-AGCUgCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 107463 0.66 0.886974
Target:  5'- cGGCGAcGACCUgG-UGGCcaGCGCGCu- -3'
miRNA:   3'- -CCGCUcUUGGAgCuGCCG--UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 123035 0.66 0.89372
Target:  5'- uGGCGugggcGGACCUgcCGgccGCGGCGCuGCGCGa -3'
miRNA:   3'- -CCGCu----CUUGGA--GC---UGCCGUG-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 102921 0.66 0.89372
Target:  5'- uGGCGGccGCCgaggagCGGCuGCGCGCGCu- -3'
miRNA:   3'- -CCGCUcuUGGa-----GCUGcCGUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 90050 0.66 0.89372
Target:  5'- gGGCGAu-GCCgaggCGcgccuCGGUGCGCACGUu -3'
miRNA:   3'- -CCGCUcuUGGa---GCu----GCCGUGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 86150 0.66 0.89372
Target:  5'- cGGCGGGGAgCUCG-CGcugACGCGCGa -3'
miRNA:   3'- -CCGCUCUUgGAGCuGCcg-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 81678 0.66 0.89372
Target:  5'- cGGCGGuacGCCUCGGCGacggucGCcCGCGCGa -3'
miRNA:   3'- -CCGCUcu-UGGAGCUGC------CGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 103980 0.66 0.893055
Target:  5'- cGGCGAGcuggaggcGGCCgUGGCGGCcguggagGCGCGCc- -3'
miRNA:   3'- -CCGCUC--------UUGGaGCUGCCG-------UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 66593 0.66 0.89172
Target:  5'- cGGcCGAGGcgcucgacuucgccGCCUaCGACGGCGaGCGCc- -3'
miRNA:   3'- -CC-GCUCU--------------UGGA-GCUGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 118773 0.66 0.886974
Target:  5'- uGCG-GAACCUgGACgcgguGGCGCGCGg-- -3'
miRNA:   3'- cCGCuCUUGGAgCUG-----CCGUGCGUgua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.