miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 102957 0.66 0.880003
Target:  5'- cGGCGcccGCCgcccaCGACGGCGCGCuGCu- -3'
miRNA:   3'- -CCGCucuUGGa----GCUGCCGUGCG-UGua -5'
29581 5' -56.5 NC_006151.1 + 104851 0.66 0.880003
Target:  5'- aGGCG-GAccagGCCgcggCGACGGaGCGCGCc- -3'
miRNA:   3'- -CCGCuCU----UGGa---GCUGCCgUGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 41469 0.66 0.880003
Target:  5'- cGGCGGGAcgAUgaCGACGGCgAC-CGCGUg -3'
miRNA:   3'- -CCGCUCU--UGgaGCUGCCG-UGcGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 57290 0.66 0.879294
Target:  5'- gGGCGuccAGcgcGGCCUUGGCGGCGCggccgaagccgcuGCGCGa -3'
miRNA:   3'- -CCGC---UC---UUGGAGCUGCCGUG-------------CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 139202 0.66 0.879294
Target:  5'- gGGCGcuGGAGCUccUGGCGGCGacgcugcCGCACAUc -3'
miRNA:   3'- -CCGC--UCUUGGa-GCUGCCGU-------GCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 58423 0.66 0.879294
Target:  5'- gGGCGugcGGcagccacGCCUCGgugGCGuGCGCGCGCGc -3'
miRNA:   3'- -CCGCu--CU-------UGGAGC---UGC-CGUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 59151 0.66 0.872811
Target:  5'- gGGCGGGu-CCagGcCGGCGuCGCGCAg -3'
miRNA:   3'- -CCGCUCuuGGagCuGCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 114096 0.66 0.872811
Target:  5'- gGGCuacuaccuGGGCCUCGGCGGCugcugccccACGUGCGc -3'
miRNA:   3'- -CCGcu------CUUGGAGCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 122613 0.66 0.872811
Target:  5'- aGGCGGugcGGGcCCUCGACcuguuCACGCACAa -3'
miRNA:   3'- -CCGCU---CUU-GGAGCUGcc---GUGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 3139 0.66 0.872811
Target:  5'- cGCGGGGcgcCCUCGGCGGgCucgGCGCAg -3'
miRNA:   3'- cCGCUCUu--GGAGCUGCC-Gug-CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 28111 0.66 0.872811
Target:  5'- gGGCGcGGcuCCUCGuCGGCucgggGCGCGCu- -3'
miRNA:   3'- -CCGC-UCuuGGAGCuGCCG-----UGCGUGua -5'
29581 5' -56.5 NC_006151.1 + 95277 0.66 0.872811
Target:  5'- uGGCGuuGACgaagaCGGCGGCgACGCGCGc -3'
miRNA:   3'- -CCGCucUUGga---GCUGCCG-UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 21566 0.66 0.872811
Target:  5'- cGGCGAGc-CCgcCGAgGGC-CGCGCGg -3'
miRNA:   3'- -CCGCUCuuGGa-GCUgCCGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 30250 0.66 0.872811
Target:  5'- cGGCGGGAGagaCGACgGGCGC-CACAg -3'
miRNA:   3'- -CCGCUCUUggaGCUG-CCGUGcGUGUa -5'
29581 5' -56.5 NC_006151.1 + 99360 0.66 0.872811
Target:  5'- cGGCGGu--CgUCGGCGGCGuCGUGCAc -3'
miRNA:   3'- -CCGCUcuuGgAGCUGCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 104806 0.66 0.872811
Target:  5'- uGCGccgcGACCUggCGGCGGCGCGCgACGg -3'
miRNA:   3'- cCGCuc--UUGGA--GCUGCCGUGCG-UGUa -5'
29581 5' -56.5 NC_006151.1 + 87349 0.66 0.87208
Target:  5'- gGGCcuccAGGGCCU-GGCGGCccccgucGCGCACGUc -3'
miRNA:   3'- -CCGc---UCUUGGAgCUGCCG-------UGCGUGUA- -5'
29581 5' -56.5 NC_006151.1 + 98444 0.66 0.865403
Target:  5'- cGcCGAGAACCUgGcCGGcCugGCGCu- -3'
miRNA:   3'- cC-GCUCUUGGAgCuGCC-GugCGUGua -5'
29581 5' -56.5 NC_006151.1 + 70944 0.66 0.865403
Target:  5'- cGGCGccu-UCUCGGCGGUGCGCGu-- -3'
miRNA:   3'- -CCGCucuuGGAGCUGCCGUGCGUgua -5'
29581 5' -56.5 NC_006151.1 + 69608 0.66 0.865403
Target:  5'- cGGCGcaccagcgacAGGAUCUCGcgguCGGCGuccCGCGCGUg -3'
miRNA:   3'- -CCGC----------UCUUGGAGCu---GCCGU---GCGUGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.