miRNA display CGI


Results 61 - 80 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 45619 0.66 0.707033
Target:  5'- -gGCgGGCGGAaGgGgGCGUGGACGc -3'
miRNA:   3'- ugCGaCCGCCUgUgCgUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 103671 0.67 0.628244
Target:  5'- -aGaaGGCGG-CGCGCGCGgCGGGgGUg -3'
miRNA:   3'- ugCgaCCGCCuGUGCGUGC-GCCUgCA- -5'
29583 3' -60.9 NC_006151.1 + 54343 0.67 0.628244
Target:  5'- cACGCUcaacGCGG-CGCGCuACGaGGACGUg -3'
miRNA:   3'- -UGCGAc---CGCCuGUGCG-UGCgCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 90385 0.67 0.628244
Target:  5'- gACGCcgcgGGCGGgacggacaGCAUGCAgGCGG-CGa -3'
miRNA:   3'- -UGCGa---CCGCC--------UGUGCGUgCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 78302 0.67 0.628244
Target:  5'- cGCGCUGGaGGGCAUGCucgacAgGCuGGACGn -3'
miRNA:   3'- -UGCGACCgCCUGUGCG-----UgCG-CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 103956 0.67 0.618329
Target:  5'- gGCGCUcGCGG-CGCGCcaGCGCGucGGCGa -3'
miRNA:   3'- -UGCGAcCGCCuGUGCG--UGCGC--CUGCa -5'
29583 3' -60.9 NC_006151.1 + 105751 0.67 0.618329
Target:  5'- aGCGCgUGGCGG-CGCGC-C-UGGGCGa -3'
miRNA:   3'- -UGCG-ACCGCCuGUGCGuGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 103052 0.67 0.618329
Target:  5'- cUGCUGGCcGAgGCGCAgGCGcACGg -3'
miRNA:   3'- uGCGACCGcCUgUGCGUgCGCcUGCa -5'
29583 3' -60.9 NC_006151.1 + 90734 0.67 0.618329
Target:  5'- gACGgUGGCGGcgGCGCccuCGgGGGCGg -3'
miRNA:   3'- -UGCgACCGCCugUGCGu--GCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 105524 0.67 0.628244
Target:  5'- cCGCaUGGCGG-CGCGCAucgggcccgagcUGCGGcACGa -3'
miRNA:   3'- uGCG-ACCGCCuGUGCGU------------GCGCC-UGCa -5'
29583 3' -60.9 NC_006151.1 + 127467 0.67 0.628244
Target:  5'- aGCGCUgGGCGG-CGCGgAacgagcCGCGGACc- -3'
miRNA:   3'- -UGCGA-CCGCCuGUGCgU------GCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 22250 0.67 0.638161
Target:  5'- cACGaCUcGGUGuACGgGUACGCGGGCGg -3'
miRNA:   3'- -UGC-GA-CCGCcUGUgCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 61264 0.67 0.648074
Target:  5'- gACGCggcggcaGGCGGuauCGUGCGgGGACGg -3'
miRNA:   3'- -UGCGa------CCGCCuguGCGUGCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 132038 0.67 0.648074
Target:  5'- -aGCcGGCGG-CGCGCggcaGCGCGG-CGg -3'
miRNA:   3'- ugCGaCCGCCuGUGCG----UGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 10227 0.67 0.648074
Target:  5'- -gGCU-GCGGACGCGgAgGgGGGCGa -3'
miRNA:   3'- ugCGAcCGCCUGUGCgUgCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 67536 0.67 0.645101
Target:  5'- gGCGCcagccGGCGucguugaccaccacGugGCGCcCGCGGGCGUc -3'
miRNA:   3'- -UGCGa----CCGC--------------CugUGCGuGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 124064 0.67 0.638161
Target:  5'- gACGC--GCGGACGgccgUGCGCGCGGccGCGa -3'
miRNA:   3'- -UGCGacCGCCUGU----GCGUGCGCC--UGCa -5'
29583 3' -60.9 NC_006151.1 + 103842 0.67 0.638161
Target:  5'- gAUGCUcgGGCGGcUGCGCGCGCagcccgacgaggGGACGc -3'
miRNA:   3'- -UGCGA--CCGCCuGUGCGUGCG------------CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 23410 0.67 0.638161
Target:  5'- aGCGCUGGUGGuCGCcgGC-CGUggGGGCGa -3'
miRNA:   3'- -UGCGACCGCCuGUG--CGuGCG--CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 58978 0.67 0.618329
Target:  5'- cACGCcuccGCGGGCACGagcgagaGCGCGG-CGUc -3'
miRNA:   3'- -UGCGac--CGCCUGUGCg------UGCGCCuGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.