miRNA display CGI


Results 41 - 60 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 39371 0.74 0.254824
Target:  5'- gUGCUGGacaccaucgaGGACugGCcCGCGGACGg -3'
miRNA:   3'- uGCGACCg---------CCUGugCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 105203 0.74 0.260789
Target:  5'- gACGCUgcgccaggaGGCGGACACGC-UGCGGcaGCGg -3'
miRNA:   3'- -UGCGA---------CCGCCUGUGCGuGCGCC--UGCa -5'
29583 3' -60.9 NC_006151.1 + 136809 0.74 0.285791
Target:  5'- cGCGCUcgcGGCcGACGCGcCGCGCGGGCu- -3'
miRNA:   3'- -UGCGA---CCGcCUGUGC-GUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 4226 0.74 0.260188
Target:  5'- gGCGCgGGCGGGCGCGgGCagccggaGCGGGCa- -3'
miRNA:   3'- -UGCGaCCGCCUGUGCgUG-------CGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 99990 0.74 0.263207
Target:  5'- gGCGCUGGCgcgcgaggaccugacGGugGCGCACGCGcGcaACGUc -3'
miRNA:   3'- -UGCGACCG---------------CCugUGCGUGCGC-C--UGCA- -5'
29583 3' -60.9 NC_006151.1 + 112954 0.74 0.253056
Target:  5'- cGCGCgauguuuuucaccgUGGCGGACGCGCGCGCGccgcCGa -3'
miRNA:   3'- -UGCG--------------ACCGCCUGUGCGUGCGCcu--GCa -5'
29583 3' -60.9 NC_006151.1 + 19059 0.74 0.273061
Target:  5'- gGCGCaGGCacucGGGCGCGCGCG-GGugGUa -3'
miRNA:   3'- -UGCGaCCG----CCUGUGCGUGCgCCugCA- -5'
29583 3' -60.9 NC_006151.1 + 118458 0.74 0.266868
Target:  5'- gGC-CUGGCcgcGGACGCGCACGCGGccuaccuCGUg -3'
miRNA:   3'- -UGcGACCG---CCUGUGCGUGCGCCu------GCA- -5'
29583 3' -60.9 NC_006151.1 + 75393 0.73 0.319651
Target:  5'- gGCGCggGGCGGGUGCGUGCGCGGGucCGg -3'
miRNA:   3'- -UGCGa-CCGCCUGUGCGUGCGCCU--GCa -5'
29583 3' -60.9 NC_006151.1 + 84637 0.73 0.294978
Target:  5'- gGCGCUGgacaacgccauggccGCGGGCGCGCGCcucgaggccgagGUGGACGa -3'
miRNA:   3'- -UGCGAC---------------CGCCUGUGCGUG------------CGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 2812 0.73 0.312646
Target:  5'- gGCGCacugGGCGGccggguccAgGCGgACGCGGACGUa -3'
miRNA:   3'- -UGCGa---CCGCC--------UgUGCgUGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 93569 0.73 0.298985
Target:  5'- cCGCgggGGCGGGCGCGCcaaagaGCGGGCu- -3'
miRNA:   3'- uGCGa--CCGCCUGUGCGug----CGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 139271 0.73 0.312646
Target:  5'- cGCGCUccgacGGCGGACGCGC-CGCccucGGCGUc -3'
miRNA:   3'- -UGCGA-----CCGCCUGUGCGuGCGc---CUGCA- -5'
29583 3' -60.9 NC_006151.1 + 31631 0.73 0.326774
Target:  5'- cGCGCcGGCacgaGCGCACGCGGGCGc -3'
miRNA:   3'- -UGCGaCCGccugUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 69310 0.73 0.319651
Target:  5'- cCGCcGGCGccACACGUGCGCGGGCGc -3'
miRNA:   3'- uGCGaCCGCc-UGUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 121651 0.73 0.319651
Target:  5'- uCGC-GGCGGACGgGCGgGCGGAgGg -3'
miRNA:   3'- uGCGaCCGCCUGUgCGUgCGCCUgCa -5'
29583 3' -60.9 NC_006151.1 + 101552 0.73 0.29233
Target:  5'- uGCGCccGGCGGACGUGUACGCGcACGUc -3'
miRNA:   3'- -UGCGa-CCGCCUGUGCGUGCGCcUGCA- -5'
29583 3' -60.9 NC_006151.1 + 56298 0.73 0.29233
Target:  5'- gGCGgaGGCGGACGC-CGCGCGGuGCc- -3'
miRNA:   3'- -UGCgaCCGCCUGUGcGUGCGCC-UGca -5'
29583 3' -60.9 NC_006151.1 + 128624 0.73 0.298985
Target:  5'- uGCGCcccaggUGGCGGAcCACGCGCGCGucGAcCGUg -3'
miRNA:   3'- -UGCG------ACCGCCU-GUGCGUGCGC--CU-GCA- -5'
29583 3' -60.9 NC_006151.1 + 98648 0.73 0.29233
Target:  5'- gGCcCUGGCGGGCGCGCGCuccGCcGACGa -3'
miRNA:   3'- -UGcGACCGCCUGUGCGUG---CGcCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.