Results 61 - 80 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29583 | 3' | -60.9 | NC_006151.1 | + | 55428 | 0.73 | 0.29233 |
Target: 5'- cGCGCaGGCGGGCGCGgACG-GGACc- -3' miRNA: 3'- -UGCGaCCGCCUGUGCgUGCgCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 31631 | 0.73 | 0.326774 |
Target: 5'- cGCGCcGGCacgaGCGCACGCGGGCGc -3' miRNA: 3'- -UGCGaCCGccugUGCGUGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 128624 | 0.73 | 0.298985 |
Target: 5'- uGCGCcccaggUGGCGGAcCACGCGCGCGucGAcCGUg -3' miRNA: 3'- -UGCG------ACCGCCU-GUGCGUGCGC--CU-GCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 2812 | 0.73 | 0.312646 |
Target: 5'- gGCGCacugGGCGGccggguccAgGCGgACGCGGACGUa -3' miRNA: 3'- -UGCGa---CCGCC--------UgUGCgUGCGCCUGCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 56298 | 0.73 | 0.29233 |
Target: 5'- gGCGgaGGCGGACGC-CGCGCGGuGCc- -3' miRNA: 3'- -UGCgaCCGCCUGUGcGUGCGCC-UGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 97578 | 0.72 | 0.348091 |
Target: 5'- -aGCUcGCGGuccacguccaucaGCGCGCACGCGGGCa- -3' miRNA: 3'- ugCGAcCGCC-------------UGUGCGUGCGCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 18161 | 0.72 | 0.348844 |
Target: 5'- -gGCggcGGCGGGCAUGUcggaAUGCGGGCGg -3' miRNA: 3'- ugCGa--CCGCCUGUGCG----UGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 5099 | 0.72 | 0.356433 |
Target: 5'- gGCGCcGGCGGAgACgGUggcggcccgGCGCGGGCGa -3' miRNA: 3'- -UGCGaCCGCCUgUG-CG---------UGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 113105 | 0.72 | 0.348844 |
Target: 5'- cCGggGGCGGGgcCGCGgACGCGGACGc -3' miRNA: 3'- uGCgaCCGCCU--GUGCgUGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 96065 | 0.72 | 0.341371 |
Target: 5'- -aGCUGGCGagcGAgcCGCGCGCGCGGcCGg -3' miRNA: 3'- ugCGACCGC---CU--GUGCGUGCGCCuGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 100897 | 0.72 | 0.33183 |
Target: 5'- uGCGCcgcGGCGcGCGCGCgcccgacgacgcgaGCGCGGGCGUg -3' miRNA: 3'- -UGCGa--CCGCcUGUGCG--------------UGCGCCUGCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 123077 | 0.72 | 0.341371 |
Target: 5'- aGCGCcGGCGG-CGCcuGUACGCGGACc- -3' miRNA: 3'- -UGCGaCCGCCuGUG--CGUGCGCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 50439 | 0.72 | 0.371956 |
Target: 5'- cGCGCcGGCGGccuggGCAcCGCcCGCGGGCGc -3' miRNA: 3'- -UGCGaCCGCC-----UGU-GCGuGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 107071 | 0.72 | 0.371956 |
Target: 5'- gUGCUGGUGGACucgcaGCugGCGGugucgcGCGUg -3' miRNA: 3'- uGCGACCGCCUGug---CGugCGCC------UGCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 67450 | 0.71 | 0.387933 |
Target: 5'- gGCGCgGGCGGgggggucgcagaGCGCGCGCagcaGCGGGCa- -3' miRNA: 3'- -UGCGaCCGCC------------UGUGCGUG----CGCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 130932 | 0.71 | 0.387933 |
Target: 5'- cCGCgggGGCGGGgGCGgcgggggguCGCGCGGGCGc -3' miRNA: 3'- uGCGa--CCGCCUgUGC---------GUGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 85065 | 0.71 | 0.37909 |
Target: 5'- gGCGCUGcaggccuGCGGGCGCcuGUACGUGGGCa- -3' miRNA: 3'- -UGCGAC-------CGCCUGUG--CGUGCGCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 20130 | 0.71 | 0.396089 |
Target: 5'- -gGCUGGgGGGCggGCGcCGCGgGGGCGg -3' miRNA: 3'- ugCGACCgCCUG--UGC-GUGCgCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 82655 | 0.71 | 0.396089 |
Target: 5'- -gGCgagGGCGGcccacccugcgGCGCGC-CGCGGGCGa -3' miRNA: 3'- ugCGa--CCGCC-----------UGUGCGuGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 103089 | 0.71 | 0.379889 |
Target: 5'- gGCGC-GaGCuGGACACGCucACGCGcGACGUg -3' miRNA: 3'- -UGCGaC-CG-CCUGUGCG--UGCGC-CUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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