miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 97363 0.71 0.404355
Target:  5'- cCGCggcggcGGCGGGCGCG-GCGgGGGCGUc -3'
miRNA:   3'- uGCGa-----CCGCCUGUGCgUGCgCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 85065 0.71 0.37909
Target:  5'- gGCGCUGcaggccuGCGGGCGCcuGUACGUGGGCa- -3'
miRNA:   3'- -UGCGAC-------CGCCUGUG--CGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 89506 0.71 0.421209
Target:  5'- cGCGCgGGU-GugGCGCA-GCGGACGUg -3'
miRNA:   3'- -UGCGaCCGcCugUGCGUgCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 106113 0.71 0.404355
Target:  5'- cCGCc-GCGGAgACGUACGCGGcCGUg -3'
miRNA:   3'- uGCGacCGCCUgUGCGUGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 111345 0.71 0.412729
Target:  5'- gACGgucgGGCGGAUggGCGCGCgGGGCGa -3'
miRNA:   3'- -UGCga--CCGCCUGugCGUGCG-CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 102702 0.71 0.412729
Target:  5'- gGCGCgGGCGG-CGCGgccgagccgaaCACGCGcGACGUc -3'
miRNA:   3'- -UGCGaCCGCCuGUGC-----------GUGCGC-CUGCA- -5'
29583 3' -60.9 NC_006151.1 + 27442 0.71 0.379889
Target:  5'- gGCGC-GGCGGACGCGguggguCGgGGGCGg -3'
miRNA:   3'- -UGCGaCCGCCUGUGCgu----GCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 82655 0.71 0.396089
Target:  5'- -gGCgagGGCGGcccacccugcgGCGCGC-CGCGGGCGa -3'
miRNA:   3'- ugCGa--CCGCC-----------UGUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 67450 0.71 0.387933
Target:  5'- gGCGCgGGCGGgggggucgcagaGCGCGCGCagcaGCGGGCa- -3'
miRNA:   3'- -UGCGaCCGCC------------UGUGCGUG----CGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 37966 0.71 0.377497
Target:  5'- -aGCUGGCGGACGCcugcguccuggccuGC-CGCGG-CGUc -3'
miRNA:   3'- ugCGACCGCCUGUG--------------CGuGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 120814 0.71 0.404355
Target:  5'- cGCGCgaGGUgcuGGACGCGC-CGCGcGACGa -3'
miRNA:   3'- -UGCGa-CCG---CCUGUGCGuGCGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 102611 0.7 0.456147
Target:  5'- gGCGCUcGaGCGGGCGCGCgACGUGaGCGc -3'
miRNA:   3'- -UGCGA-C-CGCCUGUGCG-UGCGCcUGCa -5'
29583 3' -60.9 NC_006151.1 + 73390 0.7 0.456147
Target:  5'- cGCGCaGcGCGGccgcCGCGUACGCGGcCGUg -3'
miRNA:   3'- -UGCGaC-CGCCu---GUGCGUGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 84595 0.7 0.456147
Target:  5'- cGCGCUGGCGcACGCGaacgcgcgccgcCGCGCGGcCGc -3'
miRNA:   3'- -UGCGACCGCcUGUGC------------GUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 83339 0.7 0.462422
Target:  5'- gGCGC--GCGuccacgugcuccccGGCGCGCGCGCGGGCGc -3'
miRNA:   3'- -UGCGacCGC--------------CUGUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 119757 0.7 0.464223
Target:  5'- gGCuCUGGCGGACguggccgGCGCGCGCaucGGCGa -3'
miRNA:   3'- -UGcGACCGCCUG-------UGCGUGCGc--CUGCa -5'
29583 3' -60.9 NC_006151.1 + 99027 0.7 0.456147
Target:  5'- uGCGCgucuccGCGGcccuCGCGCACGgGGACGc -3'
miRNA:   3'- -UGCGac----CGCCu---GUGCGUGCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 68047 0.7 0.465125
Target:  5'- gGCGC-GGCGGGCACGgGCuCGG-CGa -3'
miRNA:   3'- -UGCGaCCGCCUGUGCgUGcGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 50371 0.7 0.465125
Target:  5'- cCGCcGGCGGGgGCGagACGCGGGCc- -3'
miRNA:   3'- uGCGaCCGCCUgUGCg-UGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 98338 0.7 0.465125
Target:  5'- cCGCgGGcCGcGAgACGCcCGCGGGCGUg -3'
miRNA:   3'- uGCGaCC-GC-CUgUGCGuGCGCCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.