miRNA display CGI


Results 61 - 80 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 123019 0.73 0.319651
Target:  5'- cCGCcGGCGGACGcCGUgGCGUGGGCGg -3'
miRNA:   3'- uGCGaCCGCCUGU-GCG-UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 69310 0.73 0.319651
Target:  5'- cCGCcGGCGccACACGUGCGCGGGCGc -3'
miRNA:   3'- uGCGaCCGCc-UGUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 75393 0.73 0.319651
Target:  5'- gGCGCggGGCGGGUGCGUGCGCGGGucCGg -3'
miRNA:   3'- -UGCGa-CCGCCUGUGCGUGCGCCU--GCa -5'
29583 3' -60.9 NC_006151.1 + 118403 0.73 0.324625
Target:  5'- gACGCcGGUGGACaACGCcgaggagacgacggGCGCGGAgGUg -3'
miRNA:   3'- -UGCGaCCGCCUG-UGCG--------------UGCGCCUgCA- -5'
29583 3' -60.9 NC_006151.1 + 31631 0.73 0.326774
Target:  5'- cGCGCcGGCacgaGCGCACGCGGGCGc -3'
miRNA:   3'- -UGCGaCCGccugUGCGUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 100897 0.72 0.33183
Target:  5'- uGCGCcgcGGCGcGCGCGCgcccgacgacgcgaGCGCGGGCGUg -3'
miRNA:   3'- -UGCGa--CCGCcUGUGCG--------------UGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 96065 0.72 0.341371
Target:  5'- -aGCUGGCGagcGAgcCGCGCGCGCGGcCGg -3'
miRNA:   3'- ugCGACCGC---CU--GUGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 123077 0.72 0.341371
Target:  5'- aGCGCcGGCGG-CGCcuGUACGCGGACc- -3'
miRNA:   3'- -UGCGaCCGCCuGUG--CGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 97578 0.72 0.348091
Target:  5'- -aGCUcGCGGuccacguccaucaGCGCGCACGCGGGCa- -3'
miRNA:   3'- ugCGAcCGCC-------------UGUGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 113105 0.72 0.348844
Target:  5'- cCGggGGCGGGgcCGCGgACGCGGACGc -3'
miRNA:   3'- uGCgaCCGCCU--GUGCgUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 18161 0.72 0.348844
Target:  5'- -gGCggcGGCGGGCAUGUcggaAUGCGGGCGg -3'
miRNA:   3'- ugCGa--CCGCCUGUGCG----UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 5099 0.72 0.356433
Target:  5'- gGCGCcGGCGGAgACgGUggcggcccgGCGCGGGCGa -3'
miRNA:   3'- -UGCGaCCGCCUgUG-CG---------UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 50439 0.72 0.371956
Target:  5'- cGCGCcGGCGGccuggGCAcCGCcCGCGGGCGc -3'
miRNA:   3'- -UGCGaCCGCC-----UGU-GCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 107071 0.72 0.371956
Target:  5'- gUGCUGGUGGACucgcaGCugGCGGugucgcGCGUg -3'
miRNA:   3'- uGCGACCGCCUGug---CGugCGCC------UGCA- -5'
29583 3' -60.9 NC_006151.1 + 37966 0.71 0.377497
Target:  5'- -aGCUGGCGGACGCcugcguccuggccuGC-CGCGG-CGUc -3'
miRNA:   3'- ugCGACCGCCUGUG--------------CGuGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 85065 0.71 0.37909
Target:  5'- gGCGCUGcaggccuGCGGGCGCcuGUACGUGGGCa- -3'
miRNA:   3'- -UGCGAC-------CGCCUGUG--CGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 103089 0.71 0.379889
Target:  5'- gGCGC-GaGCuGGACACGCucACGCGcGACGUg -3'
miRNA:   3'- -UGCGaC-CG-CCUGUGCG--UGCGC-CUGCA- -5'
29583 3' -60.9 NC_006151.1 + 27442 0.71 0.379889
Target:  5'- gGCGC-GGCGGACGCGguggguCGgGGGCGg -3'
miRNA:   3'- -UGCGaCCGCCUGUGCgu----GCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 67450 0.71 0.387933
Target:  5'- gGCGCgGGCGGgggggucgcagaGCGCGCGCagcaGCGGGCa- -3'
miRNA:   3'- -UGCGaCCGCC------------UGUGCGUG----CGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 130932 0.71 0.387933
Target:  5'- cCGCgggGGCGGGgGCGgcgggggguCGCGCGGGCGc -3'
miRNA:   3'- uGCGa--CCGCCUgUGC---------GUGCGCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.