miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 134998 0.71 0.396089
Target:  5'- gGCGCgucuUGGCGGGgGCGCGgGgGGGCa- -3'
miRNA:   3'- -UGCG----ACCGCCUgUGCGUgCgCCUGca -5'
29583 3' -60.9 NC_006151.1 + 20130 0.71 0.396089
Target:  5'- -gGCUGGgGGGCggGCGcCGCGgGGGCGg -3'
miRNA:   3'- ugCGACCgCCUG--UGC-GUGCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 82655 0.71 0.396089
Target:  5'- -gGCgagGGCGGcccacccugcgGCGCGC-CGCGGGCGa -3'
miRNA:   3'- ugCGa--CCGCC-----------UGUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 120814 0.71 0.404355
Target:  5'- cGCGCgaGGUgcuGGACGCGC-CGCGcGACGa -3'
miRNA:   3'- -UGCGa-CCG---CCUGUGCGuGCGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 106113 0.71 0.404355
Target:  5'- cCGCc-GCGGAgACGUACGCGGcCGUg -3'
miRNA:   3'- uGCGacCGCCUgUGCGUGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 97363 0.71 0.404355
Target:  5'- cCGCggcggcGGCGGGCGCG-GCGgGGGCGUc -3'
miRNA:   3'- uGCGa-----CCGCCUGUGCgUGCgCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 111345 0.71 0.412729
Target:  5'- gACGgucgGGCGGAUggGCGCGCgGGGCGa -3'
miRNA:   3'- -UGCga--CCGCCUGugCGUGCG-CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 102702 0.71 0.412729
Target:  5'- gGCGCgGGCGG-CGCGgccgagccgaaCACGCGcGACGUc -3'
miRNA:   3'- -UGCGaCCGCCuGUGC-----------GUGCGC-CUGCA- -5'
29583 3' -60.9 NC_006151.1 + 57125 0.71 0.421209
Target:  5'- cGCGCccGGCGGucGCcccuGCGCACGCGG-CGg -3'
miRNA:   3'- -UGCGa-CCGCC--UG----UGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 89506 0.71 0.421209
Target:  5'- cGCGCgGGU-GugGCGCA-GCGGACGUg -3'
miRNA:   3'- -UGCGaCCGcCugUGCGUgCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 121230 0.71 0.421209
Target:  5'- gACGaCUGGCGGGCGau--CGUGGACGa -3'
miRNA:   3'- -UGC-GACCGCCUGUgcguGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 132536 0.7 0.429793
Target:  5'- aGCGCUccacGGCcGcCACGUACGCGGGCa- -3'
miRNA:   3'- -UGCGA----CCGcCuGUGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 137116 0.7 0.429793
Target:  5'- gACGcCUGG-GGGCGCGCgacgGCGCGGcGCGa -3'
miRNA:   3'- -UGC-GACCgCCUGUGCG----UGCGCC-UGCa -5'
29583 3' -60.9 NC_006151.1 + 65778 0.7 0.429793
Target:  5'- cCGCcGGCGGcggcgaugGCGcCGCccgGCGCGGACGUg -3'
miRNA:   3'- uGCGaCCGCC--------UGU-GCG---UGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 56664 0.7 0.438479
Target:  5'- cCGCUGGUGGACgacgGCGC-CGCGcGCGc -3'
miRNA:   3'- uGCGACCGCCUG----UGCGuGCGCcUGCa -5'
29583 3' -60.9 NC_006151.1 + 130863 0.7 0.438479
Target:  5'- gGCGCgGGCgGGAC-CGCA-GUGGGCGg -3'
miRNA:   3'- -UGCGaCCG-CCUGuGCGUgCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 103788 0.7 0.438479
Target:  5'- aGCGCUGGCGGcgcuGCAggcCGCGCugucgGCGGcCGUg -3'
miRNA:   3'- -UGCGACCGCC----UGU---GCGUG-----CGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 99437 0.7 0.438479
Target:  5'- gACGUc-GCGGACACGCuggagccccucuACGgGGACGUg -3'
miRNA:   3'- -UGCGacCGCCUGUGCG------------UGCgCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 59130 0.7 0.447265
Target:  5'- cUGCcGGUgGGugGCGCcCGCGGGCGg -3'
miRNA:   3'- uGCGaCCG-CCugUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 99027 0.7 0.456147
Target:  5'- uGCGCgucuccGCGGcccuCGCGCACGgGGACGc -3'
miRNA:   3'- -UGCGac----CGCCu---GUGCGUGCgCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.