miRNA display CGI


Results 41 - 60 of 297 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 39471 0.67 0.618329
Target:  5'- uGCGCUGGCccGGGugcCGCGagcucCGCGCGGcCGUg -3'
miRNA:   3'- -UGCGACCG--CCU---GUGC-----GUGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 39949 0.66 0.715735
Target:  5'- cCGCUGGUgcugaccccGGGCGCcgucgccGC-CGCGGGCGc -3'
miRNA:   3'- uGCGACCG---------CCUGUG-------CGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 40760 0.66 0.716698
Target:  5'- gAUGgaGGCGGcCAUcUugGCGGugGUc -3'
miRNA:   3'- -UGCgaCCGCCuGUGcGugCGCCugCA- -5'
29583 3' -60.9 NC_006151.1 + 41763 0.69 0.520773
Target:  5'- cACGUccGGCGGAaguUGCGCGCGGgaaGCGUc -3'
miRNA:   3'- -UGCGa-CCGCCUgu-GCGUGCGCC---UGCA- -5'
29583 3' -60.9 NC_006151.1 + 44508 0.67 0.618329
Target:  5'- -gGgUGGCGGugGgGaaGCGCGGGCGa -3'
miRNA:   3'- ugCgACCGCCugUgCg-UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 45440 0.68 0.569036
Target:  5'- uCGCgGGCGucGCACGCAcCGCgGGGCGg -3'
miRNA:   3'- uGCGaCCGCc-UGUGCGU-GCG-CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 45619 0.66 0.707033
Target:  5'- -gGCgGGCGGAaGgGgGCGUGGACGc -3'
miRNA:   3'- ugCGaCCGCCUgUgCgUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 47243 0.69 0.483348
Target:  5'- -gGCUGGuuGGCugGCugGCGaGAUGg -3'
miRNA:   3'- ugCGACCgcCUGugCGugCGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 48138 0.68 0.578835
Target:  5'- gGCGCUGGgGGuucCugGCAC-CGG-CGUc -3'
miRNA:   3'- -UGCGACCgCCu--GugCGUGcGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 49857 0.66 0.702177
Target:  5'- cGCGCUgGGCGcagcacguggaguuuGACACGCuguuuaugguccgucCGUGGACGa -3'
miRNA:   3'- -UGCGA-CCGC---------------CUGUGCGu--------------GCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 50001 0.66 0.707033
Target:  5'- cGCGUUuGCGcGcCGCGCGCGCGGcccgcGCGg -3'
miRNA:   3'- -UGCGAcCGC-CuGUGCGUGCGCC-----UGCa -5'
29583 3' -60.9 NC_006151.1 + 50371 0.7 0.465125
Target:  5'- cCGCcGGCGGGgGCGagACGCGGGCc- -3'
miRNA:   3'- uGCGaCCGCCUgUGCg-UGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 50439 0.72 0.371956
Target:  5'- cGCGCcGGCGGccuggGCAcCGCcCGCGGGCGc -3'
miRNA:   3'- -UGCGaCCGCC-----UGU-GCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 50650 0.7 0.474192
Target:  5'- cCGCgGGCGGACccgaguCGUGCGCGGcCGc -3'
miRNA:   3'- uGCGaCCGCCUGu-----GCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 52155 0.66 0.710907
Target:  5'- gACGCUGuCcacgugcgucucgaaGGGCGCGCGCGCGaACGc -3'
miRNA:   3'- -UGCGACcG---------------CCUGUGCGUGCGCcUGCa -5'
29583 3' -60.9 NC_006151.1 + 53253 0.66 0.667857
Target:  5'- uCGCUGGC----GCGCACGCGGcACa- -3'
miRNA:   3'- uGCGACCGccugUGCGUGCGCC-UGca -5'
29583 3' -60.9 NC_006151.1 + 53963 0.69 0.520773
Target:  5'- cACGCcagcGGCGGcgGCGCcucCGCGGGCGUc -3'
miRNA:   3'- -UGCGa---CCGCCugUGCGu--GCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 54064 0.68 0.587686
Target:  5'- gGCGUUGGUGG-CGCGCGgacccucUGCGGcgGCGg -3'
miRNA:   3'- -UGCGACCGCCuGUGCGU-------GCGCC--UGCa -5'
29583 3' -60.9 NC_006151.1 + 54343 0.67 0.628244
Target:  5'- cACGCUcaacGCGG-CGCGCuACGaGGACGUg -3'
miRNA:   3'- -UGCGAc---CGCCuGUGCG-UGCgCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 54402 0.66 0.697308
Target:  5'- cGCGCggccucGGCGccGAgGCGCugGCGcGGCGc -3'
miRNA:   3'- -UGCGa-----CCGC--CUgUGCGugCGC-CUGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.