miRNA display CGI


Results 81 - 100 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 63420 0.66 0.657975
Target:  5'- gGCGCaGGCGGGCGgcacguCGCACaGCGaGGCc- -3'
miRNA:   3'- -UGCGaCCGCCUGU------GCGUG-CGC-CUGca -5'
29583 3' -60.9 NC_006151.1 + 63507 0.67 0.648074
Target:  5'- -gGCcaGGUGGGgGCGCGCG-GGGCGg -3'
miRNA:   3'- ugCGa-CCGCCUgUGCGUGCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 64480 0.75 0.232077
Target:  5'- cCGC-GGCGGGgACGCcCGCGGGCGc -3'
miRNA:   3'- uGCGaCCGCCUgUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 64506 0.68 0.546664
Target:  5'- -gGC-GGCGGGCGCGCGCcgccaaaggccgccGCGGccGCGUc -3'
miRNA:   3'- ugCGaCCGCCUGUGCGUG--------------CGCC--UGCA- -5'
29583 3' -60.9 NC_006151.1 + 65501 0.68 0.578835
Target:  5'- gACGCcGGCGGAgCGCGCcuccucCGCGGccagcaGCGUc -3'
miRNA:   3'- -UGCGaCCGCCU-GUGCGu-----GCGCC------UGCA- -5'
29583 3' -60.9 NC_006151.1 + 65778 0.7 0.429793
Target:  5'- cCGCcGGCGGcggcgaugGCGcCGCccgGCGCGGACGUg -3'
miRNA:   3'- uGCGaCCGCC--------UGU-GCG---UGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 66537 0.69 0.492588
Target:  5'- cGCGCUcuuCGGGgGCGCGCGCGGcCGc -3'
miRNA:   3'- -UGCGAcc-GCCUgUGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 66562 0.66 0.697308
Target:  5'- nGCGCcgccGUGGACccggcgcucGCGCGCGCGGcCGa -3'
miRNA:   3'- -UGCGac--CGCCUG---------UGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 66669 0.75 0.248971
Target:  5'- -gGCggcGGUGGACGC-CAUGCGGACGUc -3'
miRNA:   3'- ugCGa--CCGCCUGUGcGUGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 66951 0.68 0.578835
Target:  5'- -gGCggcGGCGGGCGCgGCACGCuGGAg-- -3'
miRNA:   3'- ugCGa--CCGCCUGUG-CGUGCG-CCUgca -5'
29583 3' -60.9 NC_006151.1 + 67065 0.68 0.553445
Target:  5'- cUGCUGGCGGccuucgACACGCcgcucuucuccgaggACGCGGuGCGc -3'
miRNA:   3'- uGCGACCGCC------UGUGCG---------------UGCGCC-UGCa -5'
29583 3' -60.9 NC_006151.1 + 67289 0.78 0.142735
Target:  5'- cCGCUGGUGccgcGACGCGCGCGUGGACc- -3'
miRNA:   3'- uGCGACCGC----CUGUGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 67450 0.71 0.387933
Target:  5'- gGCGCgGGCGGgggggucgcagaGCGCGCGCagcaGCGGGCa- -3'
miRNA:   3'- -UGCGaCCGCC------------UGUGCGUG----CGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 67536 0.67 0.645101
Target:  5'- gGCGCcagccGGCGucguugaccaccacGugGCGCcCGCGGGCGUc -3'
miRNA:   3'- -UGCGa----CCGC--------------CugUGCGuGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 67730 0.66 0.697308
Target:  5'- gGCGC-GGCGcACAgGCACgGCGcGGCGg -3'
miRNA:   3'- -UGCGaCCGCcUGUgCGUG-CGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 67866 0.66 0.697308
Target:  5'- gGCGCcgaGGUGG-CGCGCGCGCcagcccgcgGGGCa- -3'
miRNA:   3'- -UGCGa--CCGCCuGUGCGUGCG---------CCUGca -5'
29583 3' -60.9 NC_006151.1 + 68047 0.7 0.465125
Target:  5'- gGCGC-GGCGGGCACGgGCuCGG-CGa -3'
miRNA:   3'- -UGCGaCCGCCUGUGCgUGcGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 68236 0.68 0.53991
Target:  5'- aGCGCccGCGGGCGCGUcagguagacGCGCGcGGCGa -3'
miRNA:   3'- -UGCGacCGCCUGUGCG---------UGCGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 68287 0.69 0.520773
Target:  5'- gGCGCcacGGCGGcCAgGCGCGCGcccacGACGg -3'
miRNA:   3'- -UGCGa--CCGCCuGUgCGUGCGC-----CUGCa -5'
29583 3' -60.9 NC_006151.1 + 68764 0.79 0.135777
Target:  5'- -aGCcGGCGGugGCGCGCGCGG-CGa -3'
miRNA:   3'- ugCGaCCGCCugUGCGUGCGCCuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.