miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 132536 0.7 0.429793
Target:  5'- aGCGCUccacGGCcGcCACGUACGCGGGCa- -3'
miRNA:   3'- -UGCGA----CCGcCuGUGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 132140 0.7 0.474192
Target:  5'- cGCGCcGGCGGugguugacgGCGCGCagcuGCGCGGcCGg -3'
miRNA:   3'- -UGCGaCCGCC---------UGUGCG----UGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 132038 0.67 0.648074
Target:  5'- -aGCcGGCGG-CGCGCggcaGCGCGG-CGg -3'
miRNA:   3'- ugCGaCCGCCuGUGCG----UGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 130932 0.71 0.387933
Target:  5'- cCGCgggGGCGGGgGCGgcgggggguCGCGCGGGCGc -3'
miRNA:   3'- uGCGa--CCGCCUgUGC---------GUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 130863 0.7 0.438479
Target:  5'- gGCGCgGGCgGGAC-CGCA-GUGGGCGg -3'
miRNA:   3'- -UGCGaCCG-CCUGuGCGUgCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 130495 0.7 0.456147
Target:  5'- cGCGC-GGCGccACACGCcgcgcgucucggGCGCGGGCGUc -3'
miRNA:   3'- -UGCGaCCGCc-UGUGCG------------UGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 130255 0.67 0.608424
Target:  5'- gGCGCggaagaGGCcGGCGCGCGgccccgaggcCGCGGGCGc -3'
miRNA:   3'- -UGCGa-----CCGcCUGUGCGU----------GCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 128624 0.73 0.298985
Target:  5'- uGCGCcccaggUGGCGGAcCACGCGCGCGucGAcCGUg -3'
miRNA:   3'- -UGCG------ACCGCCU-GUGCGUGCGC--CU-GCA- -5'
29583 3' -60.9 NC_006151.1 + 127805 0.66 0.66687
Target:  5'- cGCGCgggGGCGcGAgguccuugcgguuCACGUACGUGGcgGCGUc -3'
miRNA:   3'- -UGCGa--CCGC-CU-------------GUGCGUGCGCC--UGCA- -5'
29583 3' -60.9 NC_006151.1 + 127467 0.67 0.628244
Target:  5'- aGCGCUgGGCGG-CGCGgAacgagcCGCGGACc- -3'
miRNA:   3'- -UGCGA-CCGCCuGUGCgU------GCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 127248 0.66 0.716698
Target:  5'- -aGCUcuuGCGG-CGCGaCGCGCGGugGc -3'
miRNA:   3'- ugCGAc--CGCCuGUGC-GUGCGCCugCa -5'
29583 3' -60.9 NC_006151.1 + 124064 0.67 0.638161
Target:  5'- gACGC--GCGGACGgccgUGCGCGCGGccGCGa -3'
miRNA:   3'- -UGCGacCGCCUGU----GCGUGCGCC--UGCa -5'
29583 3' -60.9 NC_006151.1 + 123247 0.69 0.53031
Target:  5'- cGCGCguucugcgaGGCcGcCGCGCGCGCGGGCa- -3'
miRNA:   3'- -UGCGa--------CCGcCuGUGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 123077 0.72 0.341371
Target:  5'- aGCGCcGGCGG-CGCcuGUACGCGGACc- -3'
miRNA:   3'- -UGCGaCCGCCuGUG--CGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 123019 0.73 0.319651
Target:  5'- cCGCcGGCGGACGcCGUgGCGUGGGCGg -3'
miRNA:   3'- uGCGaCCGCCUGU-GCG-UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 122953 0.68 0.549567
Target:  5'- gGCGCcgcGGgGGGCGCGgACGCcGGCGa -3'
miRNA:   3'- -UGCGa--CCgCCUGUGCgUGCGcCUGCa -5'
29583 3' -60.9 NC_006151.1 + 122489 0.75 0.232077
Target:  5'- gACGCgGGCGagacGGCGCGCcggcGCGCGGACGc -3'
miRNA:   3'- -UGCGaCCGC----CUGUGCG----UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 122401 0.75 0.221359
Target:  5'- cGCGCUGGCGGcGCucgcCGC-CGUGGACGc -3'
miRNA:   3'- -UGCGACCGCC-UGu---GCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 122319 0.7 0.474192
Target:  5'- -aGCUGGCGG---UGCGCGUGGACc- -3'
miRNA:   3'- ugCGACCGCCuguGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 122016 0.69 0.520773
Target:  5'- cGCGCgucGCGcucGACACGUACGgCGGGCGc -3'
miRNA:   3'- -UGCGac-CGC---CUGUGCGUGC-GCCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.