miRNA display CGI


Results 101 - 120 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 134177 0.66 0.661931
Target:  5'- gGCGCUGcccacCGGAUACGCgaugcucgucgcgcaGCGCGGggGCGg -3'
miRNA:   3'- -UGCGACc----GCCUGUGCG---------------UGCGCC--UGCa -5'
29583 3' -60.9 NC_006151.1 + 113901 0.66 0.657975
Target:  5'- cGCGC-GGCGcaaGACgcugACGCGCGCGGcccGCGa -3'
miRNA:   3'- -UGCGaCCGC---CUG----UGCGUGCGCC---UGCa -5'
29583 3' -60.9 NC_006151.1 + 99184 0.66 0.657975
Target:  5'- cACGCaGGUGGACGC-CACG-GG-CGUg -3'
miRNA:   3'- -UGCGaCCGCCUGUGcGUGCgCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 89169 0.66 0.657975
Target:  5'- gGCGa-GGCGGGCGCGgGgguCGgGGGCGg -3'
miRNA:   3'- -UGCgaCCGCCUGUGCgU---GCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 63420 0.66 0.657975
Target:  5'- gGCGCaGGCGGGCGgcacguCGCACaGCGaGGCc- -3'
miRNA:   3'- -UGCGaCCGCCUGU------GCGUG-CGC-CUGca -5'
29583 3' -60.9 NC_006151.1 + 88535 0.66 0.674759
Target:  5'- aGCGCaGGCGcACGCuGCGCcgcggguaguagucGCGGACGa -3'
miRNA:   3'- -UGCGaCCGCcUGUG-CGUG--------------CGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 135156 0.66 0.677712
Target:  5'- -aGCccGGCGGGCGCG-GCcCGGACGg -3'
miRNA:   3'- ugCGa-CCGCCUGUGCgUGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 67730 0.66 0.697308
Target:  5'- gGCGC-GGCGcACAgGCACgGCGcGGCGg -3'
miRNA:   3'- -UGCGaCCGCcUGUgCGUG-CGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 66562 0.66 0.697308
Target:  5'- nGCGCcgccGUGGACccggcgcucGCGCGCGCGGcCGa -3'
miRNA:   3'- -UGCGac--CGCCUG---------UGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 54948 0.66 0.697308
Target:  5'- cGCGCUGcGCGaGCACGCGCGCc----- -3'
miRNA:   3'- -UGCGAC-CGCcUGUGCGUGCGccugca -5'
29583 3' -60.9 NC_006151.1 + 21003 0.66 0.697308
Target:  5'- gGCGCUGcCGGcgACGUGCACGCuGACGc -3'
miRNA:   3'- -UGCGACcGCC--UGUGCGUGCGcCUGCa -5'
29583 3' -60.9 NC_006151.1 + 121465 0.66 0.696332
Target:  5'- -aGCUGGgGGGCaaGCGCcCGCccccggaGGACGa -3'
miRNA:   3'- ugCGACCgCCUG--UGCGuGCG-------CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 81098 0.66 0.691448
Target:  5'- gUGCUGGgacuCGGGCAugcgauccguguaguCGCACGCGG-CGc -3'
miRNA:   3'- uGCGACC----GCCUGU---------------GCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 81887 0.66 0.687531
Target:  5'- aGCGCcGGCGccgaGGCGCGCcgguCGCGGcGCGc -3'
miRNA:   3'- -UGCGaCCGC----CUGUGCGu---GCGCC-UGCa -5'
29583 3' -60.9 NC_006151.1 + 136428 0.66 0.687531
Target:  5'- cCGC-GGCGGcGCACGCcGCGCGcuACGUc -3'
miRNA:   3'- uGCGaCCGCC-UGUGCG-UGCGCc-UGCA- -5'
29583 3' -60.9 NC_006151.1 + 99615 0.66 0.687531
Target:  5'- -gGCUGGCGcACAgcgcCGCGCGCGaGGCc- -3'
miRNA:   3'- ugCGACCGCcUGU----GCGUGCGC-CUGca -5'
29583 3' -60.9 NC_006151.1 + 86729 0.66 0.687531
Target:  5'- gGCGCgccgccGCGaGGCcgGCGUGCGCGGACa- -3'
miRNA:   3'- -UGCGac----CGC-CUG--UGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 57232 0.66 0.687531
Target:  5'- uCGCaGGCGG-CGCGCGCGgccuCGG-CGUc -3'
miRNA:   3'- uGCGaCCGCCuGUGCGUGC----GCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 30905 0.66 0.687531
Target:  5'- aGCGC--GCGGuaGCGCcCGCGGGCGg -3'
miRNA:   3'- -UGCGacCGCCugUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 139657 0.66 0.677712
Target:  5'- uCGC-GGCGGGCGCGC-CGCccGACa- -3'
miRNA:   3'- uGCGaCCGCCUGUGCGuGCGc-CUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.