miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 26353 0.66 0.707033
Target:  5'- -gGCggcGGCGGGCcgcgucgggGCGCGCgucccccgGCGGGCGg -3'
miRNA:   3'- ugCGa--CCGCCUG---------UGCGUG--------CGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 50001 0.66 0.707033
Target:  5'- cGCGUUuGCGcGcCGCGCGCGCGGcccgcGCGg -3'
miRNA:   3'- -UGCGAcCGC-CuGUGCGUGCGCC-----UGCa -5'
29583 3' -60.9 NC_006151.1 + 99547 0.66 0.707033
Target:  5'- cACGgaGcacGUGGGCGCgGCGCGCGcGGCGc -3'
miRNA:   3'- -UGCgaC---CGCCUGUG-CGUGCGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 113222 0.66 0.707033
Target:  5'- aGCGCcGGCac-CGCGC-CGUGGACGa -3'
miRNA:   3'- -UGCGaCCGccuGUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 56334 0.66 0.706063
Target:  5'- cCGgUGGCuGGAgCGCGCGCGCGccccgccGGCGc -3'
miRNA:   3'- uGCgACCG-CCU-GUGCGUGCGC-------CUGCa -5'
29583 3' -60.9 NC_006151.1 + 49857 0.66 0.702177
Target:  5'- cGCGCUgGGCGcagcacguggaguuuGACACGCuguuuaugguccgucCGUGGACGa -3'
miRNA:   3'- -UGCGA-CCGC---------------CUGUGCGu--------------GCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 21003 0.66 0.697308
Target:  5'- gGCGCUGcCGGcgACGUGCACGCuGACGc -3'
miRNA:   3'- -UGCGACcGCC--UGUGCGUGCGcCUGCa -5'
29583 3' -60.9 NC_006151.1 + 54948 0.66 0.697308
Target:  5'- cGCGCUGcGCGaGCACGCGCGCc----- -3'
miRNA:   3'- -UGCGAC-CGCcUGUGCGUGCGccugca -5'
29583 3' -60.9 NC_006151.1 + 66562 0.66 0.697308
Target:  5'- nGCGCcgccGUGGACccggcgcucGCGCGCGCGGcCGa -3'
miRNA:   3'- -UGCGac--CGCCUG---------UGCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 67730 0.66 0.697308
Target:  5'- gGCGC-GGCGcACAgGCACgGCGcGGCGg -3'
miRNA:   3'- -UGCGaCCGCcUGUgCGUG-CGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 3435 0.66 0.697308
Target:  5'- gACGC-GGCGGAagcCGC-CGuCGGGCGc -3'
miRNA:   3'- -UGCGaCCGCCUgu-GCGuGC-GCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 18997 0.66 0.697308
Target:  5'- cGCGC-GGCGcGccaccagccGCGCGCGCGCcGGCGa -3'
miRNA:   3'- -UGCGaCCGC-C---------UGUGCGUGCGcCUGCa -5'
29583 3' -60.9 NC_006151.1 + 54402 0.66 0.697308
Target:  5'- cGCGCggccucGGCGccGAgGCGCugGCGcGGCGc -3'
miRNA:   3'- -UGCGa-----CCGC--CUgUGCGugCGC-CUGCa -5'
29583 3' -60.9 NC_006151.1 + 67866 0.66 0.697308
Target:  5'- gGCGCcgaGGUGG-CGCGCGCGCcagcccgcgGGGCa- -3'
miRNA:   3'- -UGCGa--CCGCCuGUGCGUGCG---------CCUGca -5'
29583 3' -60.9 NC_006151.1 + 98943 0.66 0.697308
Target:  5'- uCGCcgaGGCGG-CGCGgGcCGUGGACGa -3'
miRNA:   3'- uGCGa--CCGCCuGUGCgU-GCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 121465 0.66 0.696332
Target:  5'- -aGCUGGgGGGCaaGCGCcCGCccccggaGGACGa -3'
miRNA:   3'- ugCGACCgCCUG--UGCGuGCG-------CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 81098 0.66 0.691448
Target:  5'- gUGCUGGgacuCGGGCAugcgauccguguaguCGCACGCGG-CGc -3'
miRNA:   3'- uGCGACC----GCCUGU---------------GCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 136428 0.66 0.687531
Target:  5'- cCGC-GGCGGcGCACGCcGCGCGcuACGUc -3'
miRNA:   3'- uGCGaCCGCC-UGUGCG-UGCGCc-UGCA- -5'
29583 3' -60.9 NC_006151.1 + 99615 0.66 0.687531
Target:  5'- -gGCUGGCGcACAgcgcCGCGCGCGaGGCc- -3'
miRNA:   3'- ugCGACCGCcUGU----GCGUGCGC-CUGca -5'
29583 3' -60.9 NC_006151.1 + 86729 0.66 0.687531
Target:  5'- gGCGCgccgccGCGaGGCcgGCGUGCGCGGACa- -3'
miRNA:   3'- -UGCGac----CGC-CUG--UGCGUGCGCCUGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.