miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 5' -53 NC_006151.1 + 4572 0.66 0.969401
Target:  5'- -aGCGGCGGGGUcacgcugccGGUGAUgaaggaGCCGugGc -3'
miRNA:   3'- gaUGCCGCUCUA---------CCACUAg-----CGGUugU- -5'
29583 5' -53 NC_006151.1 + 18057 0.66 0.975061
Target:  5'- -aGCGGgGAGcgGGgucccuUGGggGCCAGCAg -3'
miRNA:   3'- gaUGCCgCUCuaCC------ACUagCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 20615 0.71 0.819124
Target:  5'- -gACGGCGugGGGUGGUGGgggCGCCcccugGGCGg -3'
miRNA:   3'- gaUGCCGC--UCUACCACUa--GCGG-----UUGU- -5'
29583 5' -53 NC_006151.1 + 21459 0.66 0.972335
Target:  5'- --cCGGCGGcGUGGUcccgcGUCGCCGGCu -3'
miRNA:   3'- gauGCCGCUcUACCAc----UAGCGGUUGu -5'
29583 5' -53 NC_006151.1 + 21950 0.67 0.936217
Target:  5'- -cGCGGaCGGGuccaccacaucggcGUGGUGcggCGCCGGCAg -3'
miRNA:   3'- gaUGCC-GCUC--------------UACCACua-GCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 25218 0.67 0.951378
Target:  5'- cCU-CGGCG-GAgccgcgaccucuUGGUGAcccaucuccacaUCGCCAACAu -3'
miRNA:   3'- -GAuGCCGCuCU------------ACCACU------------AGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 29210 0.7 0.827848
Target:  5'- -cGCGGCGGGGUGGggaugGGUcacCGCCGGg- -3'
miRNA:   3'- gaUGCCGCUCUACCa----CUA---GCGGUUgu -5'
29583 5' -53 NC_006151.1 + 29680 0.7 0.827848
Target:  5'- -gGgGGCGGGGUGGggGAUCG-CGGCAc -3'
miRNA:   3'- gaUgCCGCUCUACCa-CUAGCgGUUGU- -5'
29583 5' -53 NC_006151.1 + 31762 0.66 0.966251
Target:  5'- cCUGCGGCG-GcgGGcGcgCGCCGGg- -3'
miRNA:   3'- -GAUGCCGCuCuaCCaCuaGCGGUUgu -5'
29583 5' -53 NC_006151.1 + 40103 0.69 0.903631
Target:  5'- --cCGGCGAGGacggggacucugUGGaGAUCGUCGGCGu -3'
miRNA:   3'- gauGCCGCUCU------------ACCaCUAGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 41090 0.67 0.951378
Target:  5'- -gACGGUGu--UGGUGGUC-CCGGCGg -3'
miRNA:   3'- gaUGCCGCucuACCACUAGcGGUUGU- -5'
29583 5' -53 NC_006151.1 + 42267 0.69 0.897083
Target:  5'- -aGCGG-GGGGUGG-GAUCGCgAGCc -3'
miRNA:   3'- gaUGCCgCUCUACCaCUAGCGgUUGu -5'
29583 5' -53 NC_006151.1 + 44203 0.68 0.927349
Target:  5'- -gGCGGCGGGAgaUGGUGAUgGUgGu-- -3'
miRNA:   3'- gaUGCCGCUCU--ACCACUAgCGgUugu -5'
29583 5' -53 NC_006151.1 + 44525 0.66 0.964255
Target:  5'- -cGCgGGCGAGAagagcgaugugguggUGGUGGUgGUCGAUg -3'
miRNA:   3'- gaUG-CCGCUCU---------------ACCACUAgCGGUUGu -5'
29583 5' -53 NC_006151.1 + 51813 0.66 0.972335
Target:  5'- cCUGCGaccGCGcGAUGGUcAUgGCCAGCu -3'
miRNA:   3'- -GAUGC---CGCuCUACCAcUAgCGGUUGu -5'
29583 5' -53 NC_006151.1 + 53944 0.67 0.947067
Target:  5'- -cGCGGCGAGGgacuUGAaccaCGCCAGCGg -3'
miRNA:   3'- gaUGCCGCUCUacc-ACUa---GCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 54925 0.67 0.937706
Target:  5'- -cACGGCGAGGUGcUGGcgUGCCAcGCGc -3'
miRNA:   3'- gaUGCCGCUCUACcACUa-GCGGU-UGU- -5'
29583 5' -53 NC_006151.1 + 63788 0.7 0.844728
Target:  5'- ---aGGCGGGGUcGGccGUCGCCAGCGc -3'
miRNA:   3'- gaugCCGCUCUA-CCacUAGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 64550 0.74 0.640746
Target:  5'- -gGCGGCGAGGccGUGGcgCGCCAGCu -3'
miRNA:   3'- gaUGCCGCUCUacCACUa-GCGGUUGu -5'
29583 5' -53 NC_006151.1 + 65818 0.69 0.903631
Target:  5'- -cGCGGUG-GAUGGgcgGccgCGCCAGCGc -3'
miRNA:   3'- gaUGCCGCuCUACCa--Cua-GCGGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.