miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 5' -53 NC_006151.1 + 84832 0.69 0.903631
Target:  5'- -gGCcGCGAGGUGcaGAUCGCCAAgAa -3'
miRNA:   3'- gaUGcCGCUCUACcaCUAGCGGUUgU- -5'
29583 5' -53 NC_006151.1 + 40103 0.69 0.903631
Target:  5'- --cCGGCGAGGacggggacucugUGGaGAUCGUCGGCGu -3'
miRNA:   3'- gauGCCGCUCU------------ACCaCUAGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 42267 0.69 0.897083
Target:  5'- -aGCGG-GGGGUGG-GAUCGCgAGCc -3'
miRNA:   3'- gaUGCCgCUCUACCaCUAGCGgUUGu -5'
29583 5' -53 NC_006151.1 + 133355 0.69 0.876003
Target:  5'- -gGCGGCGGuGGUGGUGGUgGUgGugGu -3'
miRNA:   3'- gaUGCCGCU-CUACCACUAgCGgUugU- -5'
29583 5' -53 NC_006151.1 + 104022 0.7 0.860799
Target:  5'- -cGCGGCgGAGGUGGaGcgCGCgCAGCGc -3'
miRNA:   3'- gaUGCCG-CUCUACCaCuaGCG-GUUGU- -5'
29583 5' -53 NC_006151.1 + 71979 0.7 0.852868
Target:  5'- gUGCGGCGGGGgcagcUGGUag-CGCCGGCc -3'
miRNA:   3'- gAUGCCGCUCU-----ACCAcuaGCGGUUGu -5'
29583 5' -53 NC_006151.1 + 105682 0.7 0.844728
Target:  5'- cCUACGGCGGcGcgGGgccGA-CGCCGGCGc -3'
miRNA:   3'- -GAUGCCGCU-CuaCCa--CUaGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 135533 0.7 0.844728
Target:  5'- -gGCGGCGAGcgGGgcggggagGAUCacguugagcacgGCCAGCGa -3'
miRNA:   3'- gaUGCCGCUCuaCCa-------CUAG------------CGGUUGU- -5'
29583 5' -53 NC_006151.1 + 63788 0.7 0.844728
Target:  5'- ---aGGCGGGGUcGGccGUCGCCAGCGc -3'
miRNA:   3'- gaugCCGCUCUA-CCacUAGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 29210 0.7 0.827848
Target:  5'- -cGCGGCGGGGUGGggaugGGUcacCGCCGGg- -3'
miRNA:   3'- gaUGCCGCUCUACCa----CUA---GCGGUUgu -5'
29583 5' -53 NC_006151.1 + 29680 0.7 0.827848
Target:  5'- -gGgGGCGGGGUGGggGAUCG-CGGCAc -3'
miRNA:   3'- gaUgCCGCUCUACCa-CUAGCgGUUGU- -5'
29583 5' -53 NC_006151.1 + 104891 0.7 0.827848
Target:  5'- gCUGC-GCGAGGUGGUGGacgCGgCGGCGg -3'
miRNA:   3'- -GAUGcCGCUCUACCACUa--GCgGUUGU- -5'
29583 5' -53 NC_006151.1 + 120159 0.71 0.819124
Target:  5'- -gACGGUGAc--GGUGAcgcUCGCCGACGg -3'
miRNA:   3'- gaUGCCGCUcuaCCACU---AGCGGUUGU- -5'
29583 5' -53 NC_006151.1 + 20615 0.71 0.819124
Target:  5'- -gACGGCGugGGGUGGUGGgggCGCCcccugGGCGg -3'
miRNA:   3'- gaUGCCGC--UCUACCACUa--GCGG-----UUGU- -5'
29583 5' -53 NC_006151.1 + 119786 0.71 0.801149
Target:  5'- --uCGGCGAGAcGGUGAcggaccaCGCCGGCu -3'
miRNA:   3'- gauGCCGCUCUaCCACUa------GCGGUUGu -5'
29583 5' -53 NC_006151.1 + 93440 0.71 0.782533
Target:  5'- -gGgGGCGAGcgGG-GGUCGCCGccGCGg -3'
miRNA:   3'- gaUgCCGCUCuaCCaCUAGCGGU--UGU- -5'
29583 5' -53 NC_006151.1 + 106800 0.73 0.682521
Target:  5'- -gGCGGCGgugcucgucgGGGccccgcUGGUGAUCGCCAugGa -3'
miRNA:   3'- gaUGCCGC----------UCU------ACCACUAGCGGUugU- -5'
29583 5' -53 NC_006151.1 + 64550 0.74 0.640746
Target:  5'- -gGCGGCGAGGccGUGGcgCGCCAGCu -3'
miRNA:   3'- gaUGCCGCUCUacCACUa-GCGGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.