miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29584 3' -58.9 NC_006151.1 + 55490 0.66 0.803993
Target:  5'- cCGCGgacgGCCA-GCCGcCGCGGGaccucgGCCa -3'
miRNA:   3'- -GCGCaca-UGGUcCGGU-GCGUCCa-----CGG- -5'
29584 3' -58.9 NC_006151.1 + 76839 0.66 0.803993
Target:  5'- cCGCGU---CCGGGCgACGUacAGGaagGCCa -3'
miRNA:   3'- -GCGCAcauGGUCCGgUGCG--UCCa--CGG- -5'
29584 3' -58.9 NC_006151.1 + 96391 0.66 0.803993
Target:  5'- gCGCG-GUGCC-GGCgCACGgCGGccGCCa -3'
miRNA:   3'- -GCGCaCAUGGuCCG-GUGC-GUCcaCGG- -5'
29584 3' -58.9 NC_006151.1 + 96456 0.66 0.803993
Target:  5'- gGCGUccagGUccGCCucgcGGCUccgcacGCGCAGGUGCa -3'
miRNA:   3'- gCGCA----CA--UGGu---CCGG------UGCGUCCACGg -5'
29584 3' -58.9 NC_006151.1 + 129153 0.66 0.803993
Target:  5'- gGCGcacacUGgcucucgGCCAcGUCGCGCAGG-GCCg -3'
miRNA:   3'- gCGC-----ACa------UGGUcCGGUGCGUCCaCGG- -5'
29584 3' -58.9 NC_006151.1 + 135762 0.66 0.803993
Target:  5'- aCGCGUGggacggcGCCGGGCUggACG-AGGccuucucacUGCCg -3'
miRNA:   3'- -GCGCACa------UGGUCCGG--UGCgUCC---------ACGG- -5'
29584 3' -58.9 NC_006151.1 + 137862 0.66 0.803993
Target:  5'- gGCGUGUACgcgcaCGGGCgCAgccUGCGGcUGCCc -3'
miRNA:   3'- gCGCACAUG-----GUCCG-GU---GCGUCcACGG- -5'
29584 3' -58.9 NC_006151.1 + 18837 0.66 0.795188
Target:  5'- aGCGUGUAgucCCAGGUgGCGacgugGCCg -3'
miRNA:   3'- gCGCACAU---GGUCCGgUGCguccaCGG- -5'
29584 3' -58.9 NC_006151.1 + 49604 0.66 0.795188
Target:  5'- aGCGcGcUGCCGGuCCugGC-GGUGCUg -3'
miRNA:   3'- gCGCaC-AUGGUCcGGugCGuCCACGG- -5'
29584 3' -58.9 NC_006151.1 + 125093 0.66 0.795188
Target:  5'- cCGagGUGUACCucGCC-CGCGGGgGCUu -3'
miRNA:   3'- -GCg-CACAUGGucCGGuGCGUCCaCGG- -5'
29584 3' -58.9 NC_006151.1 + 65806 0.66 0.795188
Target:  5'- gCGCGgacGUGCCGcgguggaugggcGGCCGCGcCAGcGcgGCCc -3'
miRNA:   3'- -GCGCa--CAUGGU------------CCGGUGC-GUC-Ca-CGG- -5'
29584 3' -58.9 NC_006151.1 + 101223 0.66 0.795188
Target:  5'- gGCGUGgACgGGGCC-CGgCGGGgGCa -3'
miRNA:   3'- gCGCACaUGgUCCGGuGC-GUCCaCGg -5'
29584 3' -58.9 NC_006151.1 + 92203 0.66 0.795188
Target:  5'- aCGCGcc-GCCGcGGCCGCGCuGGaGCa -3'
miRNA:   3'- -GCGCacaUGGU-CCGGUGCGuCCaCGg -5'
29584 3' -58.9 NC_006151.1 + 2789 0.66 0.786241
Target:  5'- uCGCGgcacCCGGGCCAgCGCAcggcgcacuGGgcgGCCg -3'
miRNA:   3'- -GCGCacauGGUCCGGU-GCGU---------CCa--CGG- -5'
29584 3' -58.9 NC_006151.1 + 71763 0.66 0.786241
Target:  5'- gCGCGUGguccugcgGCagcGGCgGCGgGGGcUGCCg -3'
miRNA:   3'- -GCGCACa-------UGgu-CCGgUGCgUCC-ACGG- -5'
29584 3' -58.9 NC_006151.1 + 99203 0.66 0.786241
Target:  5'- gGCGUGUGggAGGCgGUGCAGGccagcGCCu -3'
miRNA:   3'- gCGCACAUggUCCGgUGCGUCCa----CGG- -5'
29584 3' -58.9 NC_006151.1 + 19059 0.66 0.786241
Target:  5'- gGCGcagGcACuCGGGCgCGCGCGGGUGgUa -3'
miRNA:   3'- gCGCa--CaUG-GUCCG-GUGCGUCCACgG- -5'
29584 3' -58.9 NC_006151.1 + 117593 0.66 0.778075
Target:  5'- cCGCGUGgcgccgccgcaguagACCguGGGCuCGCGCgcgAGcGUGCCc -3'
miRNA:   3'- -GCGCACa--------------UGG--UCCG-GUGCG---UC-CACGG- -5'
29584 3' -58.9 NC_006151.1 + 61452 0.66 0.777161
Target:  5'- cCGCGUccGCCgccaugugcGGGCCGCGCAac-GCCg -3'
miRNA:   3'- -GCGCAcaUGG---------UCCGGUGCGUccaCGG- -5'
29584 3' -58.9 NC_006151.1 + 21104 0.66 0.777161
Target:  5'- cCGCGggGaGCCGGGUCACGUcGcGcGCCa -3'
miRNA:   3'- -GCGCa-CaUGGUCCGGUGCGuC-CaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.