miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29584 5' -55.6 NC_006151.1 + 22207 0.66 0.919511
Target:  5'- gGGGcCGACgaaGGGCGagggGACCgUCGUCa -3'
miRNA:   3'- aCCC-GUUGga-CCUGCa---CUGGaAGCAG- -5'
29584 5' -55.6 NC_006151.1 + 42657 0.66 0.919511
Target:  5'- cGGGCAuccccGCCgcggGGAUGUGugCgugCGa- -3'
miRNA:   3'- aCCCGU-----UGGa---CCUGCACugGaa-GCag -5'
29584 5' -55.6 NC_006151.1 + 8745 0.66 0.9137
Target:  5'- gGGGguGCCcGGGCGUGucucGCCUUUc-- -3'
miRNA:   3'- aCCCguUGGaCCUGCAC----UGGAAGcag -5'
29584 5' -55.6 NC_006151.1 + 101582 0.66 0.903903
Target:  5'- cGGGCuacGCCgccagcgagcuccggUGGGCcggGGCCUUCGUg -3'
miRNA:   3'- aCCCGu--UGG---------------ACCUGca-CUGGAAGCAg -5'
29584 5' -55.6 NC_006151.1 + 16938 0.66 0.901358
Target:  5'- cGGGUcacGAUCUGGGCaugcagGGCCU-CGUCc -3'
miRNA:   3'- aCCCG---UUGGACCUGca----CUGGAaGCAG- -5'
29584 5' -55.6 NC_006151.1 + 102337 0.66 0.901358
Target:  5'- aGGcGCGcgcGCugCUGGACGUGGCCggcgacgacgCGUCc -3'
miRNA:   3'- aCC-CGU---UG--GACCUGCACUGGaa--------GCAG- -5'
29584 5' -55.6 NC_006151.1 + 80267 0.66 0.900715
Target:  5'- aGGGCGACgaGGguACGgcgGACacauccgcggaggCUUCGUCg -3'
miRNA:   3'- aCCCGUUGgaCC--UGCa--CUG-------------GAAGCAG- -5'
29584 5' -55.6 NC_006151.1 + 5138 0.66 0.89483
Target:  5'- gGGGC-GCCgGGcCGgacuCCUUCGUCu -3'
miRNA:   3'- aCCCGuUGGaCCuGCacu-GGAAGCAG- -5'
29584 5' -55.6 NC_006151.1 + 140302 0.66 0.888069
Target:  5'- cGGcGCcGCCUgcgGGACGUGcGCUgcaUCGUCa -3'
miRNA:   3'- aCC-CGuUGGA---CCUGCAC-UGGa--AGCAG- -5'
29584 5' -55.6 NC_006151.1 + 114900 0.66 0.888069
Target:  5'- cGGGCGcgagGCCcGGGCGcacGGCCccggCGUCg -3'
miRNA:   3'- aCCCGU----UGGaCCUGCa--CUGGaa--GCAG- -5'
29584 5' -55.6 NC_006151.1 + 132853 0.66 0.885996
Target:  5'- cGGGCGGCCggcccgGGGCcgcgccccccagcagGGCCU-CGUCg -3'
miRNA:   3'- aCCCGUUGGa-----CCUGca-------------CUGGAaGCAG- -5'
29584 5' -55.6 NC_006151.1 + 137525 0.67 0.881078
Target:  5'- cGGGCGACgaggaCUGGGCGgacuggGACgCgggCGUCc -3'
miRNA:   3'- aCCCGUUG-----GACCUGCa-----CUG-Gaa-GCAG- -5'
29584 5' -55.6 NC_006151.1 + 135766 0.67 0.881078
Target:  5'- gUGGGaCGGCgccgggCUGGACGaGGCCUUC-UCa -3'
miRNA:   3'- -ACCC-GUUG------GACCUGCaCUGGAAGcAG- -5'
29584 5' -55.6 NC_006151.1 + 89107 0.67 0.881078
Target:  5'- gGGGCuuCCUgcgcgagaccgaGGGCGgcggGACCgggggCGUCg -3'
miRNA:   3'- aCCCGuuGGA------------CCUGCa---CUGGaa---GCAG- -5'
29584 5' -55.6 NC_006151.1 + 4809 0.67 0.881078
Target:  5'- cGGGCcgcGGCCUGG-CG-GACg-UCGUCc -3'
miRNA:   3'- aCCCG---UUGGACCuGCaCUGgaAGCAG- -5'
29584 5' -55.6 NC_006151.1 + 70976 0.67 0.881078
Target:  5'- aGGGCAacagcaGCCaGGAcucggcCGUGGCCaUCGUg -3'
miRNA:   3'- aCCCGU------UGGaCCU------GCACUGGaAGCAg -5'
29584 5' -55.6 NC_006151.1 + 21449 0.67 0.873863
Target:  5'- gGGGUGGCCcccgGcGGCGUGGuCCcgCGUCg -3'
miRNA:   3'- aCCCGUUGGa---C-CUGCACU-GGaaGCAG- -5'
29584 5' -55.6 NC_006151.1 + 124054 0.67 0.866427
Target:  5'- -cGGCGACCUGGACGcgcggacGGCCgugCG-Cg -3'
miRNA:   3'- acCCGUUGGACCUGCa------CUGGaa-GCaG- -5'
29584 5' -55.6 NC_006151.1 + 120320 0.67 0.854087
Target:  5'- cGGGCAGCCUcucGGacgccgcgcgcgcccGCGUGGCCgggcUCG-Cg -3'
miRNA:   3'- aCCCGUUGGA---CC---------------UGCACUGGa---AGCaG- -5'
29584 5' -55.6 NC_006151.1 + 65135 0.67 0.850919
Target:  5'- cGGGCuccgcGCCaGcGACGUGAUCUUCa-- -3'
miRNA:   3'- aCCCGu----UGGaC-CUGCACUGGAAGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.