miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29584 5' -55.6 NC_006151.1 + 54245 0.68 0.826164
Target:  5'- aUGGGCAACCUGGGCuacaccgagGGCCa----- -3'
miRNA:   3'- -ACCCGUUGGACCUGca-------CUGGaagcag -5'
29584 5' -55.6 NC_006151.1 + 97276 0.68 0.825309
Target:  5'- cGGGCAgcGCCUcggcggcGGGCGUGuugaGCCggccCGUCg -3'
miRNA:   3'- aCCCGU--UGGA-------CCUGCAC----UGGaa--GCAG- -5'
29584 5' -55.6 NC_006151.1 + 100325 0.68 0.817542
Target:  5'- gUGGGCccuGCCUGGgcACGUGGCguCUggcggaCGUCg -3'
miRNA:   3'- -ACCCGu--UGGACC--UGCACUG--GAa-----GCAG- -5'
29584 5' -55.6 NC_006151.1 + 84045 0.68 0.80875
Target:  5'- gUGGuGCGGCUgggGGugGggccgcaccUGugCUUCGUCa -3'
miRNA:   3'- -ACC-CGUUGGa--CCugC---------ACugGAAGCAG- -5'
29584 5' -55.6 NC_006151.1 + 11050 0.68 0.799795
Target:  5'- gGGGCccGGCCUGGACGcgGGCCa----- -3'
miRNA:   3'- aCCCG--UUGGACCUGCa-CUGGaagcag -5'
29584 5' -55.6 NC_006151.1 + 128074 0.69 0.743143
Target:  5'- gGGGCGACCgacaGGAagcgcauguccCGcUGGCCcgUCGUCg -3'
miRNA:   3'- aCCCGUUGGa---CCU-----------GC-ACUGGa-AGCAG- -5'
29584 5' -55.6 NC_006151.1 + 18430 0.69 0.743143
Target:  5'- aGGGCcGCCggcGGGCGUcgcccGCCUccUCGUCg -3'
miRNA:   3'- aCCCGuUGGa--CCUGCAc----UGGA--AGCAG- -5'
29584 5' -55.6 NC_006151.1 + 97375 0.7 0.723369
Target:  5'- cGGGCGcgGCggGGGCGUcGGCCU-CGUCc -3'
miRNA:   3'- aCCCGU--UGgaCCUGCA-CUGGAaGCAG- -5'
29584 5' -55.6 NC_006151.1 + 120243 0.7 0.693134
Target:  5'- cGGG-GACCUGGcgcGCGUGAgCUUCGa- -3'
miRNA:   3'- aCCCgUUGGACC---UGCACUgGAAGCag -5'
29584 5' -55.6 NC_006151.1 + 62099 0.71 0.68294
Target:  5'- cGGuCGGCCUGGGCGcGGCCgUgGUCg -3'
miRNA:   3'- aCCcGUUGGACCUGCaCUGGaAgCAG- -5'
29584 5' -55.6 NC_006151.1 + 23711 0.71 0.675777
Target:  5'- gGGGCAGCCguaguacucgcggUGGACGaggggcaccuugcagUGGCCgcCGUCa -3'
miRNA:   3'- aCCCGUUGG-------------ACCUGC---------------ACUGGaaGCAG- -5'
29584 5' -55.6 NC_006151.1 + 60935 0.72 0.614999
Target:  5'- gUGGGCGaguagagcugccccaGCgUGGACaUGACCU-CGUCg -3'
miRNA:   3'- -ACCCGU---------------UGgACCUGcACUGGAaGCAG- -5'
29584 5' -55.6 NC_006151.1 + 54710 0.73 0.56987
Target:  5'- cUGGGCcagGGCCUGGACGaggUGGCCgagcUCGcCg -3'
miRNA:   3'- -ACCCG---UUGGACCUGC---ACUGGa---AGCaG- -5'
29584 5' -55.6 NC_006151.1 + 23262 0.73 0.56987
Target:  5'- gGGGCAucGCCgUGGACG--ACCUcgUCGUCa -3'
miRNA:   3'- aCCCGU--UGG-ACCUGCacUGGA--AGCAG- -5'
29584 5' -55.6 NC_006151.1 + 134335 0.74 0.500048
Target:  5'- cGGGCAucGCCacGGACGUGcCCUUCuUCg -3'
miRNA:   3'- aCCCGU--UGGa-CCUGCACuGGAAGcAG- -5'
29584 5' -55.6 NC_006151.1 + 124939 0.76 0.390481
Target:  5'- cGGGC--CCUGGGCGccuCCUUCGUCa -3'
miRNA:   3'- aCCCGuuGGACCUGCacuGGAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.