miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29585 5' -57.5 NC_006151.1 + 94840 0.66 0.818691
Target:  5'- gUUgGugAAGGugGGCGagaaGCCCUcGCUg -3'
miRNA:   3'- -AAgUugUUCCugCCGCa---CGGGA-CGGu -5'
29585 5' -57.5 NC_006151.1 + 139743 0.66 0.816069
Target:  5'- -gCGACAGgaggcggaucguccGGACGGCGgGCCCgacgcGCCc -3'
miRNA:   3'- aaGUUGUU--------------CCUGCCGCaCGGGa----CGGu -5'
29585 5' -57.5 NC_006151.1 + 81619 0.66 0.800923
Target:  5'- -gCAGCAGGGcgACGGCGaagaagaGCgCCUGCUg -3'
miRNA:   3'- aaGUUGUUCC--UGCCGCa------CG-GGACGGu -5'
29585 5' -57.5 NC_006151.1 + 126054 0.66 0.791799
Target:  5'- gUCGGCAAGGugGuccuGgGUGCCaCggggGCCGu -3'
miRNA:   3'- aAGUUGUUCCugC----CgCACGG-Ga---CGGU- -5'
29585 5' -57.5 NC_006151.1 + 20985 0.66 0.791799
Target:  5'- gUCGccgggcACGAGGACGGCGcUGCCg-GCg- -3'
miRNA:   3'- aAGU------UGUUCCUGCCGC-ACGGgaCGgu -5'
29585 5' -57.5 NC_006151.1 + 135086 0.66 0.782528
Target:  5'- --gGGCGGGGGCGGCGggGCCggGCgGg -3'
miRNA:   3'- aagUUGUUCCUGCCGCa-CGGgaCGgU- -5'
29585 5' -57.5 NC_006151.1 + 38605 0.66 0.776899
Target:  5'- -aCGGCGAGGAggacgaggggcucucCGGCGcgGCCCUccgcggggacgGCCAc -3'
miRNA:   3'- aaGUUGUUCCU---------------GCCGCa-CGGGA-----------CGGU- -5'
29585 5' -57.5 NC_006151.1 + 95439 0.66 0.772171
Target:  5'- --uGGCGAGGGCGGCGccgcgcgUGUCCguguggaagUGCCGg -3'
miRNA:   3'- aagUUGUUCCUGCCGC-------ACGGG---------ACGGU- -5'
29585 5' -57.5 NC_006151.1 + 91530 0.67 0.763581
Target:  5'- --aGACGAGGAaGGCGUGCgCgaggugcgcgGCCAg -3'
miRNA:   3'- aagUUGUUCCUgCCGCACGgGa---------CGGU- -5'
29585 5' -57.5 NC_006151.1 + 54926 0.67 0.763581
Target:  5'- -aCGGCGAGGugcUGGCGUGCCacgcgCUGCgCGa -3'
miRNA:   3'- aaGUUGUUCCu--GCCGCACGG-----GACG-GU- -5'
29585 5' -57.5 NC_006151.1 + 52389 0.67 0.753924
Target:  5'- ---cGCGGGGGCGGCGgGCgCC-GCCGc -3'
miRNA:   3'- aaguUGUUCCUGCCGCaCG-GGaCGGU- -5'
29585 5' -57.5 NC_006151.1 + 130550 0.67 0.734289
Target:  5'- ---cGCGAGGGCGGC--GCgCUGCCGc -3'
miRNA:   3'- aaguUGUUCCUGCCGcaCGgGACGGU- -5'
29585 5' -57.5 NC_006151.1 + 36847 0.67 0.734289
Target:  5'- --gGACGAGGACGGacucgGCCUcGCCGg -3'
miRNA:   3'- aagUUGUUCCUGCCgca--CGGGaCGGU- -5'
29585 5' -57.5 NC_006151.1 + 142126 0.67 0.72433
Target:  5'- -cCAccGCGAGGAUGGCGcccgaUGCCUgcGCCGg -3'
miRNA:   3'- aaGU--UGUUCCUGCCGC-----ACGGGa-CGGU- -5'
29585 5' -57.5 NC_006151.1 + 86140 0.67 0.72433
Target:  5'- -aCGAUAGGGACGGCGgggaGCUCgcGCUg -3'
miRNA:   3'- aaGUUGUUCCUGCCGCa---CGGGa-CGGu -5'
29585 5' -57.5 NC_006151.1 + 131906 0.67 0.72433
Target:  5'- -gCGACGGGGGCGGCagcaggGCCUccgcggugcUGCCGu -3'
miRNA:   3'- aaGUUGUUCCUGCCGca----CGGG---------ACGGU- -5'
29585 5' -57.5 NC_006151.1 + 100660 0.68 0.694005
Target:  5'- gUCGACGAGcGCGGCGUGCUg-GCg- -3'
miRNA:   3'- aAGUUGUUCcUGCCGCACGGgaCGgu -5'
29585 5' -57.5 NC_006151.1 + 28167 0.68 0.673508
Target:  5'- gUCGGCGucguuGGGGCGGCGagUGCCgucgGCCGg -3'
miRNA:   3'- aAGUUGU-----UCCUGCCGC--ACGGga--CGGU- -5'
29585 5' -57.5 NC_006151.1 + 133383 0.68 0.663202
Target:  5'- -gCGGCcGGGGCGGCG-GCCgggGCCGa -3'
miRNA:   3'- aaGUUGuUCCUGCCGCaCGGga-CGGU- -5'
29585 5' -57.5 NC_006151.1 + 119287 0.69 0.642524
Target:  5'- --gGACAAGGACGggcGCGUGCUgCUGCaCAc -3'
miRNA:   3'- aagUUGUUCCUGC---CGCACGG-GACG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.