miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29586 3' -52.6 NC_006151.1 + 123903 0.66 0.972062
Target:  5'- --cGCCGUGCggCG-CGGCGGCcguGACGc -3'
miRNA:   3'- cuaCGGCGCGuaGUaGUUGCCG---UUGU- -5'
29586 3' -52.6 NC_006151.1 + 101887 0.66 0.972062
Target:  5'- --cGCCGCGgGUCcagaAGCGGCcgAGCAu -3'
miRNA:   3'- cuaCGGCGCgUAGuag-UUGCCG--UUGU- -5'
29586 3' -52.6 NC_006151.1 + 66534 0.66 0.972062
Target:  5'- --cGCCGCGC-UCuUCGGgGGCGcgcGCGg -3'
miRNA:   3'- cuaCGGCGCGuAGuAGUUgCCGU---UGU- -5'
29586 3' -52.6 NC_006151.1 + 22314 0.66 0.972062
Target:  5'- --cGCCGaGCGUCGUCcg-GGCGACc -3'
miRNA:   3'- cuaCGGCgCGUAGUAGuugCCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 53276 0.66 0.969063
Target:  5'- -cUGCCGCGCGUgcUCGAaGcGCGACu -3'
miRNA:   3'- cuACGGCGCGUAguAGUUgC-CGUUGu -5'
29586 3' -52.6 NC_006151.1 + 69686 0.66 0.969063
Target:  5'- --aGCUGCGCcucgcCGUCGAUGGUGGCc -3'
miRNA:   3'- cuaCGGCGCGua---GUAGUUGCCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 97403 0.66 0.969063
Target:  5'- cGUGCCGUggaucGCGUUGUCGACGcGCGu-- -3'
miRNA:   3'- cUACGGCG-----CGUAGUAGUUGC-CGUugu -5'
29586 3' -52.6 NC_006151.1 + 67293 0.66 0.96812
Target:  5'- uGGUGCCGCGacgcgcgcguggacCA-CGUCAAgGGCGAgAa -3'
miRNA:   3'- -CUACGGCGC--------------GUaGUAGUUgCCGUUgU- -5'
29586 3' -52.6 NC_006151.1 + 35980 0.66 0.96812
Target:  5'- --cGCCGCggccgaggaagaggGCAUCGcguccggcccCGACGGCGGCAg -3'
miRNA:   3'- cuaCGGCG--------------CGUAGUa---------GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 58294 0.66 0.967801
Target:  5'- aGggGUCGCuCAUCucgccccggcguuUCAGCGGCGGCGc -3'
miRNA:   3'- -CuaCGGCGcGUAGu------------AGUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 2585 0.66 0.96584
Target:  5'- --aGCaCGCGCuggCGguaggcgcgCGGCGGCAGCGg -3'
miRNA:   3'- cuaCG-GCGCGua-GUa--------GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 72154 0.66 0.96584
Target:  5'- --aGCCGCagGCAcUCGUCGcCGaGCAGCGg -3'
miRNA:   3'- cuaCGGCG--CGU-AGUAGUuGC-CGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 82074 0.66 0.96584
Target:  5'- --cGUCGCGCAUCGUCuggugcAUGGCc--- -3'
miRNA:   3'- cuaCGGCGCGUAGUAGu-----UGCCGuugu -5'
29586 3' -52.6 NC_006151.1 + 88042 0.66 0.96584
Target:  5'- --cGCUGCGUGUCcUCGAagacgGGCAGCu -3'
miRNA:   3'- cuaCGGCGCGUAGuAGUUg----CCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 78449 0.66 0.96584
Target:  5'- cGUGCUGCGCGaggcgacCGUCuuCGGCGAg- -3'
miRNA:   3'- cUACGGCGCGUa------GUAGuuGCCGUUgu -5'
29586 3' -52.6 NC_006151.1 + 82680 0.66 0.96584
Target:  5'- --cGCCGCGgG-CGagGGCGGCGGCc -3'
miRNA:   3'- cuaCGGCGCgUaGUagUUGCCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 113041 0.66 0.96584
Target:  5'- gGGUGCUGCGCGg---CGGCGG-AGCGc -3'
miRNA:   3'- -CUACGGCGCGUaguaGUUGCCgUUGU- -5'
29586 3' -52.6 NC_006151.1 + 130788 0.66 0.962389
Target:  5'- cAUGUCGCGCGUC--CAGCuGGCGuACGc -3'
miRNA:   3'- cUACGGCGCGUAGuaGUUG-CCGU-UGU- -5'
29586 3' -52.6 NC_006151.1 + 10639 0.66 0.962389
Target:  5'- cGUGCCgGCGCggCAUCcccgcccaGGCGGCGGgGg -3'
miRNA:   3'- cUACGG-CGCGuaGUAG--------UUGCCGUUgU- -5'
29586 3' -52.6 NC_006151.1 + 138924 0.66 0.962389
Target:  5'- --cGCCGC-CAcggUCAUCGGCuGCAGCu -3'
miRNA:   3'- cuaCGGCGcGU---AGUAGUUGcCGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.