miRNA display CGI


Results 21 - 40 of 143 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29586 3' -52.6 NC_006151.1 + 10639 0.66 0.962389
Target:  5'- cGUGCCgGCGCggCAUCcccgcccaGGCGGCGGgGg -3'
miRNA:   3'- cUACGG-CGCGuaGUAG--------UUGCCGUUgU- -5'
29586 3' -52.6 NC_006151.1 + 130788 0.66 0.962389
Target:  5'- cAUGUCGCGCGUC--CAGCuGGCGuACGc -3'
miRNA:   3'- cUACGGCGCGUAGuaGUUG-CCGU-UGU- -5'
29586 3' -52.6 NC_006151.1 + 76737 0.66 0.962389
Target:  5'- uGAUGgaGCGCG-CGUaCGcgcGCGGCAGCAg -3'
miRNA:   3'- -CUACggCGCGUaGUA-GU---UGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 60811 0.66 0.958702
Target:  5'- --cGCCGCGCAgc-UCcACGaGCAGCu -3'
miRNA:   3'- cuaCGGCGCGUaguAGuUGC-CGUUGu -5'
29586 3' -52.6 NC_006151.1 + 68238 0.66 0.958702
Target:  5'- --cGCC-CGCGggcgCGUCAgguagacgcgcGCGGCGACGg -3'
miRNA:   3'- cuaCGGcGCGUa---GUAGU-----------UGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 81610 0.66 0.958702
Target:  5'- --cGgCGCGCAgcagCAgggCGACGGCGAa- -3'
miRNA:   3'- cuaCgGCGCGUa---GUa--GUUGCCGUUgu -5'
29586 3' -52.6 NC_006151.1 + 125488 0.66 0.958702
Target:  5'- --gGCCaGCGCGUC-UCGGCgcgcaugcucGGCGACGu -3'
miRNA:   3'- cuaCGG-CGCGUAGuAGUUG----------CCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 133481 0.66 0.958702
Target:  5'- gGcgGCCGCGgG-CGUCAccuUGGCGGCGc -3'
miRNA:   3'- -CuaCGGCGCgUaGUAGUu--GCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 99353 0.66 0.958702
Target:  5'- --gGCUGCacgGCgGUCGUCGGCGGCGucguGCAc -3'
miRNA:   3'- cuaCGGCG---CG-UAGUAGUUGCCGU----UGU- -5'
29586 3' -52.6 NC_006151.1 + 128003 0.66 0.958702
Target:  5'- --cGUCGCgGUcgCGgggCGGCGGCGACGg -3'
miRNA:   3'- cuaCGGCG-CGuaGUa--GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 104394 0.67 0.954775
Target:  5'- --gGCC-CGCAUCGcCGGCGGCGu-- -3'
miRNA:   3'- cuaCGGcGCGUAGUaGUUGCCGUugu -5'
29586 3' -52.6 NC_006151.1 + 139720 0.67 0.954775
Target:  5'- --gGCCaGCaGCAgCAcCAGCGGCGGCGa -3'
miRNA:   3'- cuaCGG-CG-CGUaGUaGUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 69522 0.67 0.954775
Target:  5'- --cGCCGCGCcgCG-CGAgGGCGcccuGCAu -3'
miRNA:   3'- cuaCGGCGCGuaGUaGUUgCCGU----UGU- -5'
29586 3' -52.6 NC_006151.1 + 73336 0.67 0.954775
Target:  5'- --cGCCGCGCGUgGcgaagagguUCuGCGGCAGg- -3'
miRNA:   3'- cuaCGGCGCGUAgU---------AGuUGCCGUUgu -5'
29586 3' -52.6 NC_006151.1 + 130509 0.67 0.954775
Target:  5'- --cGCCGCGCGUC-UCGggcGCgGGCGucGCGu -3'
miRNA:   3'- cuaCGGCGCGUAGuAGU---UG-CCGU--UGU- -5'
29586 3' -52.6 NC_006151.1 + 66765 0.67 0.954369
Target:  5'- --cGCCGCGaCGgccgcccUCGggaCGGCGGCGGCGg -3'
miRNA:   3'- cuaCGGCGC-GU-------AGUa--GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 126080 0.67 0.950602
Target:  5'- gGggGCCGUGaucucggcCGUCGGCGGCAugGu -3'
miRNA:   3'- -CuaCGGCGCgua-----GUAGUUGCCGUugU- -5'
29586 3' -52.6 NC_006151.1 + 111992 0.67 0.950602
Target:  5'- cGGUGCgGCuacgaCGUCGacgCGGCGGCGGCGa -3'
miRNA:   3'- -CUACGgCGc----GUAGUa--GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 60019 0.67 0.950602
Target:  5'- --cGuuGaCGC-UCGUCAGCGuGCAGCGc -3'
miRNA:   3'- cuaCggC-GCGuAGUAGUUGC-CGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 30941 0.67 0.950602
Target:  5'- --cGcCCGCGCggUAUCG-CGGCGGCc -3'
miRNA:   3'- cuaC-GGCGCGuaGUAGUuGCCGUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.