miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29586 3' -52.6 NC_006151.1 + 2585 0.66 0.96584
Target:  5'- --aGCaCGCGCuggCGguaggcgcgCGGCGGCAGCGg -3'
miRNA:   3'- cuaCG-GCGCGua-GUa--------GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 5240 0.7 0.841134
Target:  5'- --cGCCGCGCGg---CGGCGGCGGgGg -3'
miRNA:   3'- cuaCGGCGCGUaguaGUUGCCGUUgU- -5'
29586 3' -52.6 NC_006151.1 + 5439 0.72 0.767699
Target:  5'- cGggGCCGCGgGcgacggUC-UCGACGGCGACGg -3'
miRNA:   3'- -CuaCGGCGCgU------AGuAGUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 6141 0.69 0.880674
Target:  5'- --gGCCGCgGCcgCGagGACGGCGGCc -3'
miRNA:   3'- cuaCGGCG-CGuaGUagUUGCCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 10639 0.66 0.962389
Target:  5'- cGUGCCgGCGCggCAUCcccgcccaGGCGGCGGgGg -3'
miRNA:   3'- cUACGG-CGCGuaGUAG--------UUGCCGUUgU- -5'
29586 3' -52.6 NC_006151.1 + 11237 0.7 0.849482
Target:  5'- --gGCCGCGagggCcgCGGCGGCGACc -3'
miRNA:   3'- cuaCGGCGCgua-GuaGUUGCCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 17470 0.72 0.757829
Target:  5'- -uUGCCGCgGCGuguccUCGUCGGCGGCGc-- -3'
miRNA:   3'- cuACGGCG-CGU-----AGUAGUUGCCGUugu -5'
29586 3' -52.6 NC_006151.1 + 17637 0.68 0.925942
Target:  5'- --cGCgaGCGCGUUcgCGACGGCGGa- -3'
miRNA:   3'- cuaCGg-CGCGUAGuaGUUGCCGUUgu -5'
29586 3' -52.6 NC_006151.1 + 17913 0.69 0.899595
Target:  5'- cGcgGCgGCGCugaucgcgacgcccAUCAggCAGCGGCGGCGu -3'
miRNA:   3'- -CuaCGgCGCG--------------UAGUa-GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 19641 0.7 0.841134
Target:  5'- --cGCCGCGCG-CGUCGAgGGUGAa- -3'
miRNA:   3'- cuaCGGCGCGUaGUAGUUgCCGUUgu -5'
29586 3' -52.6 NC_006151.1 + 20311 0.69 0.894862
Target:  5'- --cGCCGUgGCGUUggCGGCGGCgAGCAg -3'
miRNA:   3'- cuaCGGCG-CGUAGuaGUUGCCG-UUGU- -5'
29586 3' -52.6 NC_006151.1 + 21582 0.75 0.558958
Target:  5'- --gGCCGCGCGggGUCGAUGGCGuACGg -3'
miRNA:   3'- cuaCGGCGCGUagUAGUUGCCGU-UGU- -5'
29586 3' -52.6 NC_006151.1 + 22314 0.66 0.972062
Target:  5'- --cGCCGaGCGUCGUCcg-GGCGACc -3'
miRNA:   3'- cuaCGGCgCGUAGUAGuugCCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 25348 0.69 0.87322
Target:  5'- cGUGCCGCGaUAUCAcaUCGGaugggaGGCGGCGg -3'
miRNA:   3'- cUACGGCGC-GUAGU--AGUUg-----CCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 27105 0.68 0.908058
Target:  5'- cGUGUCGCcCGUCAcgUCGGCGGCcgaGACGg -3'
miRNA:   3'- cUACGGCGcGUAGU--AGUUGCCG---UUGU- -5'
29586 3' -52.6 NC_006151.1 + 30749 0.69 0.88789
Target:  5'- aGUGCCGCGgG-CGgggCGGgGGCAGCAc -3'
miRNA:   3'- cUACGGCGCgUaGUa--GUUgCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 30941 0.67 0.950602
Target:  5'- --cGcCCGCGCggUAUCG-CGGCGGCc -3'
miRNA:   3'- cuaC-GGCGCGuaGUAGUuGCCGUUGu -5'
29586 3' -52.6 NC_006151.1 + 31106 0.7 0.82383
Target:  5'- --cGCCGCGCcaggggaaaCcgCAGCGGCGAUAa -3'
miRNA:   3'- cuaCGGCGCGua-------GuaGUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 35980 0.66 0.96812
Target:  5'- --cGCCGCggccgaggaagaggGCAUCGcguccggcccCGACGGCGGCAg -3'
miRNA:   3'- cuaCGGCG--------------CGUAGUa---------GUUGCCGUUGU- -5'
29586 3' -52.6 NC_006151.1 + 36937 0.71 0.811265
Target:  5'- cGcgGCCGCgGCuUCAgcagcuccagcagCAGCGGCAGCGa -3'
miRNA:   3'- -CuaCGGCG-CGuAGUa------------GUUGCCGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.