miRNA display CGI


Results 1 - 20 of 170 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29586 5' -56.8 NC_006151.1 + 59645 0.66 0.915042
Target:  5'- cCCCGaaGACgcgcucgcUgcgcagcgccucGGGGACGCGCGCGc -3'
miRNA:   3'- -GGGCacCUGaa------A------------UCCCUGCGCGCGCc -5'
29586 5' -56.8 NC_006151.1 + 137850 0.66 0.915042
Target:  5'- uUCGUGGACac--GGGcguguACGCGCaCGGg -3'
miRNA:   3'- gGGCACCUGaaauCCC-----UGCGCGcGCC- -5'
29586 5' -56.8 NC_006151.1 + 91563 0.66 0.915042
Target:  5'- -gCG-GGGCgau-GGcGGCGCGCGCGu -3'
miRNA:   3'- ggGCaCCUGaaauCC-CUGCGCGCGCc -5'
29586 5' -56.8 NC_006151.1 + 49677 0.66 0.915042
Target:  5'- gCCCGgaGGACgc---GGACGCGCcccCGGa -3'
miRNA:   3'- -GGGCa-CCUGaaaucCCUGCGCGc--GCC- -5'
29586 5' -56.8 NC_006151.1 + 131836 0.66 0.914471
Target:  5'- aCCGUGGugaugaGCg--GGGcggccgaGACGCGCGcCGGc -3'
miRNA:   3'- gGGCACC------UGaaaUCC-------CUGCGCGC-GCC- -5'
29586 5' -56.8 NC_006151.1 + 75431 0.66 0.911583
Target:  5'- -gCGUGGGCgcgaagcugccGGcGugGCGCGCGu -3'
miRNA:   3'- ggGCACCUGaaau-------CC-CugCGCGCGCc -5'
29586 5' -56.8 NC_006151.1 + 21424 0.66 0.909231
Target:  5'- uCUCG-GGcCUcgGGGGuCGCGgCGUGGg -3'
miRNA:   3'- -GGGCaCCuGAaaUCCCuGCGC-GCGCC- -5'
29586 5' -56.8 NC_006151.1 + 45580 0.66 0.909231
Target:  5'- uCCCG-GGACggcccgAGGGG-GCGgGgGGa -3'
miRNA:   3'- -GGGCaCCUGaaa---UCCCUgCGCgCgCC- -5'
29586 5' -56.8 NC_006151.1 + 84887 0.66 0.909231
Target:  5'- uCUCGcUGGACUUccUGGccauGGuguacgcCGCGCGCGGc -3'
miRNA:   3'- -GGGC-ACCUGAA--AUC----CCu------GCGCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 106352 0.66 0.909231
Target:  5'- gCgGUGGACacgcuGGACGCGgGCGc -3'
miRNA:   3'- gGgCACCUGaaaucCCUGCGCgCGCc -5'
29586 5' -56.8 NC_006151.1 + 113680 0.66 0.909231
Target:  5'- gCCGagaaccGCUUcgAGGGGCGCGUguGCGGg -3'
miRNA:   3'- gGGCacc---UGAAa-UCCCUGCGCG--CGCC- -5'
29586 5' -56.8 NC_006151.1 + 117193 0.66 0.909231
Target:  5'- gCCGggGGGCgucgUAGuaguaGACGgGCGCGGc -3'
miRNA:   3'- gGGCa-CCUGaa--AUCc----CUGCgCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 33298 0.66 0.909231
Target:  5'- cCCCG-GGGCgc-----GCGCGCGUGGg -3'
miRNA:   3'- -GGGCaCCUGaaaucccUGCGCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 19098 0.66 0.905636
Target:  5'- gCUCGUacacguaguacagcaGGcACcgcGGGGGCGCGCGCGc -3'
miRNA:   3'- -GGGCA---------------CC-UGaaaUCCCUGCGCGCGCc -5'
29586 5' -56.8 NC_006151.1 + 653 0.66 0.903194
Target:  5'- uUCCG-GGGCgcggccGGGGCGgGCuccGCGGa -3'
miRNA:   3'- -GGGCaCCUGaaau--CCCUGCgCG---CGCC- -5'
29586 5' -56.8 NC_006151.1 + 73313 0.66 0.903194
Target:  5'- gUCCGcguccagcaUGGGCg--GGGcGcCGCGCGUGGc -3'
miRNA:   3'- -GGGC---------ACCUGaaaUCC-CuGCGCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 41745 0.66 0.903194
Target:  5'- aUCCGUGGggaccggcgucACguccGGcGGAaguUGCGCGCGGg -3'
miRNA:   3'- -GGGCACC-----------UGaaa-UC-CCU---GCGCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 46014 0.66 0.903194
Target:  5'- gCCCGUGGA----GGGGGCGaCGgauguCGaCGGg -3'
miRNA:   3'- -GGGCACCUgaaaUCCCUGC-GC-----GC-GCC- -5'
29586 5' -56.8 NC_006151.1 + 82408 0.66 0.903194
Target:  5'- gCCCGaGGGCggccccgAGaggcgcGGGCGCucGCGCGGg -3'
miRNA:   3'- -GGGCaCCUGaaa----UC------CCUGCG--CGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 134097 0.66 0.903194
Target:  5'- aCCGUGGACgg-AGGGcgGCugcugGUGUGcCGGa -3'
miRNA:   3'- gGGCACCUGaaaUCCC--UG-----CGCGC-GCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.