miRNA display CGI


Results 21 - 40 of 170 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29586 5' -56.8 NC_006151.1 + 29434 0.66 0.90196
Target:  5'- gCCGcgggGGGCggcggggagaGGGGACGCGgagggaGCGGg -3'
miRNA:   3'- gGGCa---CCUGaaa-------UCCCUGCGCg-----CGCC- -5'
29586 5' -56.8 NC_006151.1 + 122420 0.66 0.90134
Target:  5'- gCCGUGGACgccgccgaggcccGGGAgGCGgagGCGGc -3'
miRNA:   3'- gGGCACCUGaaau---------CCCUgCGCg--CGCC- -5'
29586 5' -56.8 NC_006151.1 + 133713 0.66 0.898836
Target:  5'- aCCCG-GGuCUUucucgagcugacaUGGcgagcgaguggggucGGGCGCGUGCGGa -3'
miRNA:   3'- -GGGCaCCuGAA-------------AUC---------------CCUGCGCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 111326 0.66 0.89757
Target:  5'- gCCCGggcacGGGCgagaugacggucgGGcGGAUggGCGCGCGGg -3'
miRNA:   3'- -GGGCa----CCUGaaa----------UC-CCUG--CGCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 84410 0.66 0.896934
Target:  5'- --gGUGGGCgcggugauaAGGcGGCGCGCgGCGGc -3'
miRNA:   3'- gggCACCUGaaa------UCC-CUGCGCG-CGCC- -5'
29586 5' -56.8 NC_006151.1 + 4135 0.66 0.896934
Target:  5'- gCUCGgccGGGCcggccccGGGGAuCGCGuCGCGGa -3'
miRNA:   3'- -GGGCa--CCUGaaa----UCCCU-GCGC-GCGCC- -5'
29586 5' -56.8 NC_006151.1 + 66079 0.66 0.896934
Target:  5'- gCCGccUGGGCUUccacgcGGGccugcaGCGCGCGCGc -3'
miRNA:   3'- gGGC--ACCUGAAau----CCC------UGCGCGCGCc -5'
29586 5' -56.8 NC_006151.1 + 5075 0.66 0.896934
Target:  5'- gCCGaGGGCcgcGGGGcCGCG-GCGGg -3'
miRNA:   3'- gGGCaCCUGaaaUCCCuGCGCgCGCC- -5'
29586 5' -56.8 NC_006151.1 + 115787 0.66 0.896934
Target:  5'- cCUCG-GGcgcGCUcgucGGGauGCGCGCGCGGa -3'
miRNA:   3'- -GGGCaCC---UGAaau-CCC--UGCGCGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 117615 0.66 0.896296
Target:  5'- aCCGUGGGCU-------CGCGCGCGa -3'
miRNA:   3'- gGGCACCUGAaaucccuGCGCGCGCc -5'
29586 5' -56.8 NC_006151.1 + 5121 0.66 0.890454
Target:  5'- gCCCGgcgcGGGCgaguGGGGCGcCGgGcCGGa -3'
miRNA:   3'- -GGGCa---CCUGaaauCCCUGC-GCgC-GCC- -5'
29586 5' -56.8 NC_006151.1 + 45163 0.66 0.890454
Target:  5'- gCUGgaUGGACggacGGGGugGCGUGCc- -3'
miRNA:   3'- gGGC--ACCUGaaa-UCCCugCGCGCGcc -5'
29586 5' -56.8 NC_006151.1 + 3954 0.66 0.890454
Target:  5'- cUCCGcGGGCcc--GGGcCGCGCgGCGGc -3'
miRNA:   3'- -GGGCaCCUGaaauCCCuGCGCG-CGCC- -5'
29586 5' -56.8 NC_006151.1 + 5033 0.66 0.890454
Target:  5'- gCCG-GGGCc--GGGGAgGC-CGCGGc -3'
miRNA:   3'- gGGCaCCUGaaaUCCCUgCGcGCGCC- -5'
29586 5' -56.8 NC_006151.1 + 5261 0.66 0.890454
Target:  5'- gCCCGggGGGCgg-AGGGcgaGCGgGC-CGGg -3'
miRNA:   3'- -GGGCa-CCUGaaaUCCC---UGCgCGcGCC- -5'
29586 5' -56.8 NC_006151.1 + 71217 0.66 0.890454
Target:  5'- gUCCGU-GACcgUGGGcGCGCGCGCc- -3'
miRNA:   3'- -GGGCAcCUGaaAUCCcUGCGCGCGcc -5'
29586 5' -56.8 NC_006151.1 + 113104 0.66 0.890454
Target:  5'- aCCGgGGGC---GGGGcCGCGgaCGCGGa -3'
miRNA:   3'- gGGCaCCUGaaaUCCCuGCGC--GCGCC- -5'
29586 5' -56.8 NC_006151.1 + 122144 0.66 0.890454
Target:  5'- gCCGUGGACg--AGuuccuCGCGCGCa- -3'
miRNA:   3'- gGGCACCUGaaaUCccu--GCGCGCGcc -5'
29586 5' -56.8 NC_006151.1 + 136984 0.66 0.883756
Target:  5'- gCCGcgccGGGC---GGcGGGCGCGCGCGc -3'
miRNA:   3'- gGGCa---CCUGaaaUC-CCUGCGCGCGCc -5'
29586 5' -56.8 NC_006151.1 + 129814 0.66 0.883756
Target:  5'- gCCCGUGaGCgc---GGA-GCGCGCGGc -3'
miRNA:   3'- -GGGCACcUGaaaucCCUgCGCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.