miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29587 3' -57.5 NC_006151.1 + 27558 0.66 0.846088
Target:  5'- gGGCUGG-GCugGGACGGgggccgggugGGUGGgcgagGCUCc -3'
miRNA:   3'- -UCGACCaCG--UCUGCUa---------CCACCa----CGGG- -5'
29587 3' -57.5 NC_006151.1 + 105075 0.66 0.846088
Target:  5'- gAGCUGGacgUGCAGGCcGUcGaGUGGcUGCaCCa -3'
miRNA:   3'- -UCGACC---ACGUCUGcUA-C-CACC-ACG-GG- -5'
29587 3' -57.5 NC_006151.1 + 125780 0.66 0.837992
Target:  5'- ----cGUGCGcAUGGUGGaGGUGCCCg -3'
miRNA:   3'- ucgacCACGUcUGCUACCaCCACGGG- -5'
29587 3' -57.5 NC_006151.1 + 44890 0.66 0.829709
Target:  5'- cGGC-GGUGU--GCGGUGGUGuGUGUgCg -3'
miRNA:   3'- -UCGaCCACGucUGCUACCAC-CACGgG- -5'
29587 3' -57.5 NC_006151.1 + 5094 0.66 0.829709
Target:  5'- cGGCgGGcGCcGGCGGagacGGUGGcgGCCCg -3'
miRNA:   3'- -UCGaCCaCGuCUGCUa---CCACCa-CGGG- -5'
29587 3' -57.5 NC_006151.1 + 74135 0.66 0.821248
Target:  5'- cGCgGGUGCAG-CGGgugccgggGGUcguccGUGCCCa -3'
miRNA:   3'- uCGaCCACGUCuGCUa-------CCAc----CACGGG- -5'
29587 3' -57.5 NC_006151.1 + 60394 0.67 0.794866
Target:  5'- cGgUGGUGUAGACGAgGGcGcGcacgGCCCa -3'
miRNA:   3'- uCgACCACGUCUGCUaCCaC-Ca---CGGG- -5'
29587 3' -57.5 NC_006151.1 + 3817 0.67 0.785768
Target:  5'- gAGCuggacuUGGUGCuGGCGG-GGcUGGaggGCCCg -3'
miRNA:   3'- -UCG------ACCACGuCUGCUaCC-ACCa--CGGG- -5'
29587 3' -57.5 NC_006151.1 + 121450 0.67 0.776532
Target:  5'- cGCUGGUGCccGCGGagcUGGgGGgcaagcGCCCg -3'
miRNA:   3'- uCGACCACGucUGCU---ACCaCCa-----CGGG- -5'
29587 3' -57.5 NC_006151.1 + 131726 0.67 0.767168
Target:  5'- ---aGGUgGUAGGCGG-GGUGGcggGCCCg -3'
miRNA:   3'- ucgaCCA-CGUCUGCUaCCACCa--CGGG- -5'
29587 3' -57.5 NC_006151.1 + 38194 0.67 0.767168
Target:  5'- cGCUGGUGCGcuacaGCG-UGGacgGG-GCCCg -3'
miRNA:   3'- uCGACCACGUc----UGCuACCa--CCaCGGG- -5'
29587 3' -57.5 NC_006151.1 + 45399 0.67 0.767168
Target:  5'- --aUGGUGguGG---UGGUGGUGCCg -3'
miRNA:   3'- ucgACCACguCUgcuACCACCACGGg -5'
29587 3' -57.5 NC_006151.1 + 29963 0.68 0.748089
Target:  5'- gAGCUcGGaccGCGG-CGAUGGUGaauggGCCCg -3'
miRNA:   3'- -UCGA-CCa--CGUCuGCUACCACca---CGGG- -5'
29587 3' -57.5 NC_006151.1 + 41078 0.68 0.738393
Target:  5'- uGgUGGgagGUGGACGGuguUGGUGGU-CCCg -3'
miRNA:   3'- uCgACCa--CGUCUGCU---ACCACCAcGGG- -5'
29587 3' -57.5 NC_006151.1 + 41156 0.68 0.718733
Target:  5'- gGGCgGGaGuUGGACGAUGGUGGU-CCUg -3'
miRNA:   3'- -UCGaCCaC-GUCUGCUACCACCAcGGG- -5'
29587 3' -57.5 NC_006151.1 + 77810 0.68 0.713768
Target:  5'- cGCUGGUGCAGGCGuaccucuccgagcUGCCCa -3'
miRNA:   3'- uCGACCACGUCUGCuaccacc------ACGGG- -5'
29587 3' -57.5 NC_006151.1 + 8653 0.68 0.708787
Target:  5'- uGCgGGUGUuacuGGCGAUaccgguaccgacGGUGGUGgCCg -3'
miRNA:   3'- uCGaCCACGu---CUGCUA------------CCACCACgGG- -5'
29587 3' -57.5 NC_006151.1 + 51047 0.68 0.708787
Target:  5'- uGGUgacGGUGguGGCGAUGGUGauggcggcgGCCUc -3'
miRNA:   3'- -UCGa--CCACguCUGCUACCACca-------CGGG- -5'
29587 3' -57.5 NC_006151.1 + 90781 0.69 0.648065
Target:  5'- cGGCgGGcgcGCAGAagaaGAaGGUGGUcGCCCg -3'
miRNA:   3'- -UCGaCCa--CGUCUg---CUaCCACCA-CGGG- -5'
29587 3' -57.5 NC_006151.1 + 107449 0.69 0.641938
Target:  5'- uGGCUGGaccUGCucggcGACGAccUGGUGGccagcgcgcugccgcUGCCCc -3'
miRNA:   3'- -UCGACC---ACGu----CUGCU--ACCACC---------------ACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.