miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29587 3' -57.5 NC_006151.1 + 56590 0.7 0.586869
Target:  5'- gGGCUGGUGCGGACGcgccccGGcGGcgcGCUCa -3'
miRNA:   3'- -UCGACCACGUCUGCua----CCaCCa--CGGG- -5'
29587 3' -57.5 NC_006151.1 + 84042 0.7 0.597029
Target:  5'- uGCgUGGUGCGGcUGggGGUGGgGCCg -3'
miRNA:   3'- uCG-ACCACGUCuGCuaCCACCaCGGg -5'
29587 3' -57.5 NC_006151.1 + 98952 0.7 0.597029
Target:  5'- cGGCgcgGGccGUGGACGAggcGGcgcUGGUGCCCg -3'
miRNA:   3'- -UCGa--CCa-CGUCUGCUa--CC---ACCACGGG- -5'
29587 3' -57.5 NC_006151.1 + 23412 0.7 0.606195
Target:  5'- cGCUGGUggucgccggccguGgGGGCGAUgGGUGGgagggugGCCCc -3'
miRNA:   3'- uCGACCA-------------CgUCUGCUA-CCACCa------CGGG- -5'
29587 3' -57.5 NC_006151.1 + 130464 0.7 0.607214
Target:  5'- uGGCgUGGUGCAgGGCGAUGGcc-UGCCg -3'
miRNA:   3'- -UCG-ACCACGU-CUGCUACCaccACGGg -5'
29587 3' -57.5 NC_006151.1 + 91681 0.7 0.607214
Target:  5'- cGGgUGGUGCGcGugGGUggGGUGGcgGUCCa -3'
miRNA:   3'- -UCgACCACGU-CugCUA--CCACCa-CGGG- -5'
29587 3' -57.5 NC_006151.1 + 134261 0.7 0.627633
Target:  5'- cGGCgaGGUGCAGGCGAUuGUagccccGGgccGCCCa -3'
miRNA:   3'- -UCGa-CCACGUCUGCUAcCA------CCa--CGGG- -5'
29587 3' -57.5 NC_006151.1 + 75399 0.71 0.546624
Target:  5'- gGGCgGGUGCGuGCGcgGGUccGGgagGCCCg -3'
miRNA:   3'- -UCGaCCACGUcUGCuaCCA--CCa--CGGG- -5'
29587 3' -57.5 NC_006151.1 + 121159 0.72 0.488086
Target:  5'- cGCUGGUGCAGACGGccGUGuacgcggccGUGCUg -3'
miRNA:   3'- uCGACCACGUCUGCUacCAC---------CACGGg -5'
29587 3' -57.5 NC_006151.1 + 41322 0.72 0.507297
Target:  5'- gGGgUGGUGguGGuguuguUGGUGGUGGUGguCCCg -3'
miRNA:   3'- -UCgACCACguCU------GCUACCACCAC--GGG- -5'
29587 3' -57.5 NC_006151.1 + 45323 0.72 0.513124
Target:  5'- aGGCUGGgagGguGGCGGUGGaGGacgggagcgugugGCCCg -3'
miRNA:   3'- -UCGACCa--CguCUGCUACCaCCa------------CGGG- -5'
29587 3' -57.5 NC_006151.1 + 133357 0.73 0.459932
Target:  5'- cGGCggUGGUGguGGUGGUGGUGGUGgCg -3'
miRNA:   3'- -UCG--ACCACguCUGCUACCACCACgGg -5'
29587 3' -57.5 NC_006151.1 + 112038 0.74 0.409811
Target:  5'- gAGCUGGggccgGCGGGCGGgcggcggcggUGGUGGUGgggcugguggagcucCCCg -3'
miRNA:   3'- -UCGACCa----CGUCUGCU----------ACCACCAC---------------GGG- -5'
29587 3' -57.5 NC_006151.1 + 141701 0.74 0.397821
Target:  5'- cGGCUGGcgGCGGACGc----GGUGCCCg -3'
miRNA:   3'- -UCGACCa-CGUCUGCuaccaCCACGGG- -5'
29587 3' -57.5 NC_006151.1 + 87392 0.74 0.389395
Target:  5'- cAGgUGGUcccgcaGCAGcCGGUGGUGGUgcagGCCCa -3'
miRNA:   3'- -UCgACCA------CGUCuGCUACCACCA----CGGG- -5'
29587 3' -57.5 NC_006151.1 + 55969 0.75 0.34906
Target:  5'- cGGCUGGUGU--GCGA-GGUgcgcgaGGUGCCCg -3'
miRNA:   3'- -UCGACCACGucUGCUaCCA------CCACGGG- -5'
29587 3' -57.5 NC_006151.1 + 78651 0.75 0.34906
Target:  5'- gAGCUGGUGgAGGCGGccgGGgcgcgGGUGCUg -3'
miRNA:   3'- -UCGACCACgUCUGCUa--CCa----CCACGGg -5'
29587 3' -57.5 NC_006151.1 + 45161 0.76 0.304711
Target:  5'- cGGCUGGaugGaCGGACGG-GGUGGcgUGCCCg -3'
miRNA:   3'- -UCGACCa--C-GUCUGCUaCCACC--ACGGG- -5'
29587 3' -57.5 NC_006151.1 + 44224 0.78 0.223746
Target:  5'- uGGUUGGUGguGAUGAUGGcGGagaaGCCCg -3'
miRNA:   3'- -UCGACCACguCUGCUACCaCCa---CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.