miRNA display CGI


Results 1 - 20 of 290 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29587 5' -63.8 NC_006151.1 + 55473 0.65 0.593926
Target:  5'- -gGGGCgcgcgcccggcgccGCGGACGGCCagccgCCgCGGgACCUc -3'
miRNA:   3'- caCCCG--------------UGCCUGCUGG-----GG-GCCgUGGG- -5'
29587 5' -63.8 NC_006151.1 + 117844 0.66 0.591039
Target:  5'- -cGGGC-CGGAcucuaccaccgccgcCGAcgucgcguucgcCCCUCGGCGCCg -3'
miRNA:   3'- caCCCGuGCCU---------------GCU------------GGGGGCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 50653 0.66 0.591039
Target:  5'- -cGGGCggacccgagucgugcGCGGcCGcACCCCC-GCGCCg -3'
miRNA:   3'- caCCCG---------------UGCCuGC-UGGGGGcCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 13418 0.66 0.587193
Target:  5'- -gGGaGC-CGGGCccgcgUCCCCGGgGCCCg -3'
miRNA:   3'- caCC-CGuGCCUGcu---GGGGGCCgUGGG- -5'
29587 5' -63.8 NC_006151.1 + 13977 0.66 0.587193
Target:  5'- -gGGaGC-CGGGCccgcgUCCCCGGgGCCCa -3'
miRNA:   3'- caCC-CGuGCCUGcu---GGGGGCCgUGGG- -5'
29587 5' -63.8 NC_006151.1 + 70773 0.66 0.587193
Target:  5'- --cGGCcaACGcGCGcGCCUCCGGCACCg -3'
miRNA:   3'- cacCCG--UGCcUGC-UGGGGGCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 73386 0.66 0.587193
Target:  5'- -gGGGCGCGcagcGCGGCCgCCGcGUACgCg -3'
miRNA:   3'- caCCCGUGCc---UGCUGGgGGC-CGUGgG- -5'
29587 5' -63.8 NC_006151.1 + 128810 0.66 0.587193
Target:  5'- -cGcGGCGCGcGugG-CCCCguacgCGGCGCUCu -3'
miRNA:   3'- caC-CCGUGC-CugCuGGGG-----GCCGUGGG- -5'
29587 5' -63.8 NC_006151.1 + 138140 0.66 0.587193
Target:  5'- cGUGGaCGCGGAgGACCggCGcGCGCUCg -3'
miRNA:   3'- -CACCcGUGCCUgCUGGggGC-CGUGGG- -5'
29587 5' -63.8 NC_006151.1 + 35719 0.66 0.587193
Target:  5'- --cGGCGCGGAcucugaagacucCGGCuCUCCGGCggcuaucaGCCCu -3'
miRNA:   3'- cacCCGUGCCU------------GCUG-GGGGCCG--------UGGG- -5'
29587 5' -63.8 NC_006151.1 + 121289 0.66 0.587193
Target:  5'- -cGGGCGCGuGGcCGACCgcgaCgGGCGCUg -3'
miRNA:   3'- caCCCGUGC-CU-GCUGGg---GgCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 130290 0.66 0.587193
Target:  5'- -cGGGCGCGcGcCGGCCgaCGGCGCg- -3'
miRNA:   3'- caCCCGUGC-CuGCUGGggGCCGUGgg -5'
29587 5' -63.8 NC_006151.1 + 138333 0.66 0.586232
Target:  5'- -cGGGCcCGGcACGcgcgcaGCCCgCCGGCccgcaccuucgugGCCCu -3'
miRNA:   3'- caCCCGuGCC-UGC------UGGG-GGCCG-------------UGGG- -5'
29587 5' -63.8 NC_006151.1 + 30902 0.66 0.584311
Target:  5'- -cGGaGCgcgcgguagcgcccGCGGGCGGCCCgCgCGGauCGCCCg -3'
miRNA:   3'- caCC-CG--------------UGCCUGCUGGG-G-GCC--GUGGG- -5'
29587 5' -63.8 NC_006151.1 + 119296 0.66 0.581432
Target:  5'- -cGGGCgcgugcugcugcacACGGccucgcagcccgcgACGGCCCCgGGCAaCCa -3'
miRNA:   3'- caCCCG--------------UGCC--------------UGCUGGGGgCCGUgGG- -5'
29587 5' -63.8 NC_006151.1 + 41520 0.66 0.581432
Target:  5'- -cGGGCgccgcggaGCGGAagcccccgcccgcgGACCCCCGGUGCg- -3'
miRNA:   3'- caCCCG--------UGCCUg-------------CUGGGGGCCGUGgg -5'
29587 5' -63.8 NC_006151.1 + 112590 0.66 0.577598
Target:  5'- -cGGGCuucgUGGA-GGCCgCCgCGGCGCCg -3'
miRNA:   3'- caCCCGu---GCCUgCUGG-GG-GCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 95558 0.66 0.577598
Target:  5'- aUGGGCAgGGAcuCGACgCCgaggccgaGGCGCuCCa -3'
miRNA:   3'- cACCCGUgCCU--GCUGgGGg-------CCGUG-GG- -5'
29587 5' -63.8 NC_006151.1 + 34590 0.66 0.577598
Target:  5'- --cGGCugGGGCG-CCCUCGgagcGCGCgCCg -3'
miRNA:   3'- cacCCGugCCUGCuGGGGGC----CGUG-GG- -5'
29587 5' -63.8 NC_006151.1 + 1399 0.66 0.577598
Target:  5'- --aGGa--GGAgGACCCCCGuCACCCc -3'
miRNA:   3'- cacCCgugCCUgCUGGGGGCcGUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.