miRNA display CGI


Results 21 - 40 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29587 5' -63.8 NC_006151.1 + 34590 0.66 0.577598
Target:  5'- --cGGCugGGGCG-CCCUCGgagcGCGCgCCg -3'
miRNA:   3'- cacCCGugCCUGCuGGGGGC----CGUG-GG- -5'
29587 5' -63.8 NC_006151.1 + 95558 0.66 0.577598
Target:  5'- aUGGGCAgGGAcuCGACgCCgaggccgaGGCGCuCCa -3'
miRNA:   3'- cACCCGUgCCU--GCUGgGGg-------CCGUG-GG- -5'
29587 5' -63.8 NC_006151.1 + 112590 0.66 0.577598
Target:  5'- -cGGGCuucgUGGA-GGCCgCCgCGGCGCCg -3'
miRNA:   3'- caCCCGu---GCCUgCUGG-GG-GCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 114913 0.66 0.577598
Target:  5'- -cGGGCGC--ACGGCCCCgGcgucGCGCUCg -3'
miRNA:   3'- caCCCGUGccUGCUGGGGgC----CGUGGG- -5'
29587 5' -63.8 NC_006151.1 + 86887 0.66 0.575683
Target:  5'- -cGcGGCGCaguacaaccagcuGGugGucaaccaGCgCCCGGCGCCCa -3'
miRNA:   3'- caC-CCGUG-------------CCugC-------UGgGGGCCGUGGG- -5'
29587 5' -63.8 NC_006151.1 + 141817 0.66 0.568039
Target:  5'- -aGGGCACGGGCcgguucggGGgUCCC-GCGCUCg -3'
miRNA:   3'- caCCCGUGCCUG--------CUgGGGGcCGUGGG- -5'
29587 5' -63.8 NC_006151.1 + 75222 0.66 0.568039
Target:  5'- -gGGGCGCGcGuCGGCCacguaGGCGCCg -3'
miRNA:   3'- caCCCGUGC-CuGCUGGggg--CCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 113513 0.66 0.568039
Target:  5'- -aGGGCuucgugGCGGACGcgcGCuUCCUGGCGCUg -3'
miRNA:   3'- caCCCG------UGCCUGC---UG-GGGGCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 10571 0.66 0.568039
Target:  5'- --uGGCGCGGcCGGCUcggcggCCCGGCccuuccuccGCCCu -3'
miRNA:   3'- cacCCGUGCCuGCUGG------GGGCCG---------UGGG- -5'
29587 5' -63.8 NC_006151.1 + 15212 0.66 0.568039
Target:  5'- aUGGGCuacacGCGccaGCGcCCCUCGGCcCCCu -3'
miRNA:   3'- cACCCG-----UGCc--UGCuGGGGGCCGuGGG- -5'
29587 5' -63.8 NC_006151.1 + 70106 0.66 0.568039
Target:  5'- -aGGGCGCGaGCGgguccACgCCCGcGCGCCg -3'
miRNA:   3'- caCCCGUGCcUGC-----UGgGGGC-CGUGGg -5'
29587 5' -63.8 NC_006151.1 + 122984 0.66 0.568039
Target:  5'- -gGGGCGuCGGcgacgaagACGGgCCCgGcGCGCCCc -3'
miRNA:   3'- caCCCGU-GCC--------UGCUgGGGgC-CGUGGG- -5'
29587 5' -63.8 NC_006151.1 + 118432 0.66 0.568039
Target:  5'- -cGGGCGCGGAggUGugCgCgCGGCucgGCCUg -3'
miRNA:   3'- caCCCGUGCCU--GCugG-GgGCCG---UGGG- -5'
29587 5' -63.8 NC_006151.1 + 105542 0.66 0.567085
Target:  5'- -cGGGCccgagcuGCGGcACGACgCCCUGcGCGCgCu -3'
miRNA:   3'- caCCCG-------UGCC-UGCUG-GGGGC-CGUGgG- -5'
29587 5' -63.8 NC_006151.1 + 90954 0.66 0.562322
Target:  5'- -aGGGCuccgucgcgccgaccGCGu-CGACgCCCUGGCGCCg -3'
miRNA:   3'- caCCCG---------------UGCcuGCUG-GGGGCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 121064 0.66 0.562322
Target:  5'- cGUGGGCuucacgugcucgcagACGGGCGGCggcgCCgGGCugCa -3'
miRNA:   3'- -CACCCG---------------UGCCUGCUGg---GGgCCGugGg -5'
29587 5' -63.8 NC_006151.1 + 59609 0.66 0.558519
Target:  5'- -cGGGCACGGccccggagGCGuaguGCCCguacaCGGC-CCCg -3'
miRNA:   3'- caCCCGUGCC--------UGC----UGGGg----GCCGuGGG- -5'
29587 5' -63.8 NC_006151.1 + 29681 0.66 0.558519
Target:  5'- -gGGGCGgGGugGGggaUCgCGGCACCg -3'
miRNA:   3'- caCCCGUgCCugCUg--GGgGCCGUGGg -5'
29587 5' -63.8 NC_006151.1 + 11548 0.66 0.558519
Target:  5'- -aGGGUACaGAgCGAa-CCCGGC-CCCg -3'
miRNA:   3'- caCCCGUGcCU-GCUggGGGCCGuGGG- -5'
29587 5' -63.8 NC_006151.1 + 124061 0.66 0.558519
Target:  5'- cUGGacGCGCGGACGGCCgUgCGcGCGgCCg -3'
miRNA:   3'- cACC--CGUGCCUGCUGG-GgGC-CGUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.