miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 3724 0.66 0.833733
Target:  5'- -uCGGGCGcUGGGUccgGGCCgGCgGCGGGg -3'
miRNA:   3'- cuGCCUGU-ACCCG---UUGGaCGgCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 100352 0.66 0.825338
Target:  5'- uGGCGGACgucguggacgccGUGGGCG-CCUuCCGCGc- -3'
miRNA:   3'- -CUGCCUG------------UACCCGUuGGAcGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 99547 0.66 0.825338
Target:  5'- cACGGAgcaCGUGGGCGcggcgcgcgcgGCgCUGCUGCGcGAg -3'
miRNA:   3'- cUGCCU---GUACCCGU-----------UG-GACGGCGU-CU- -5'
29589 3' -57.7 NC_006151.1 + 36016 0.66 0.825338
Target:  5'- cGACGGcgGCAgccaGGGCucCCggcGCCGCGGc -3'
miRNA:   3'- -CUGCC--UGUa---CCCGuuGGa--CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 82652 0.66 0.821931
Target:  5'- uGCGG-CGaGGGCGGCCcacccugcggcgcGCCGCGGGc -3'
miRNA:   3'- cUGCCuGUaCCCGUUGGa------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 4566 0.66 0.816768
Target:  5'- uGCGGcaGCGgcgGGGUcACgCUGCCGguGAu -3'
miRNA:   3'- cUGCC--UGUa--CCCGuUG-GACGGCguCU- -5'
29589 3' -57.7 NC_006151.1 + 85928 0.66 0.816768
Target:  5'- gGAgGGGC-UGGGCcugCUGCUGCAGc -3'
miRNA:   3'- -CUgCCUGuACCCGuugGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 78046 0.66 0.815902
Target:  5'- cGACGcGGCGcaucUGGGCGacgcgcggcgggaGCCUGUCccuGCAGAu -3'
miRNA:   3'- -CUGC-CUGU----ACCCGU-------------UGGACGG---CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 33091 0.66 0.811545
Target:  5'- gGGCGGGCGguggaggGGGgAgaggaaggucugggcGCgUGCCGCGGGc -3'
miRNA:   3'- -CUGCCUGUa------CCCgU---------------UGgACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 101461 0.66 0.80803
Target:  5'- -gUGGGCcUGGGCcucuACC-GCCGCGGc -3'
miRNA:   3'- cuGCCUGuACCCGu---UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 5616 0.66 0.80803
Target:  5'- cGGCGGAgG-GGGCGccGCC-GCCGCcGGg -3'
miRNA:   3'- -CUGCCUgUaCCCGU--UGGaCGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 121059 0.66 0.80803
Target:  5'- -cCGcGCGUGGGCuucACgUGCuCGCAGAc -3'
miRNA:   3'- cuGCcUGUACCCGu--UGgACG-GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 106090 0.66 0.799132
Target:  5'- cGACugGGACuc-GGCGGCCaaggccGCCGCGGAg -3'
miRNA:   3'- -CUG--CCUGuacCCGUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 99106 0.66 0.799132
Target:  5'- cACGGACcaGGGCGugCUGgCGCugcuGGAc -3'
miRNA:   3'- cUGCCUGuaCCCGUugGACgGCG----UCU- -5'
29589 3' -57.7 NC_006151.1 + 135175 0.66 0.799132
Target:  5'- gGACGGGCGccGGCuGCC-GCCGCcGGg -3'
miRNA:   3'- -CUGCCUGUacCCGuUGGaCGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 122772 0.66 0.799132
Target:  5'- cGACGGGCugcucGUGGGCGGCUg--CGCGGc -3'
miRNA:   3'- -CUGCCUG-----UACCCGUUGGacgGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 124138 0.66 0.798234
Target:  5'- cACGGugGUGcGGCuggagcccgagcaGGCCUGCCccgaguacucGCAGGg -3'
miRNA:   3'- cUGCCugUAC-CCG-------------UUGGACGG----------CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 55491 0.66 0.790083
Target:  5'- cGCGGAC--GGcCAGCC-GCCGCGGGa -3'
miRNA:   3'- cUGCCUGuaCCcGUUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 4690 0.66 0.790083
Target:  5'- --aGGACAUGgccucgccGGCGGCCccGCUGUAGAu -3'
miRNA:   3'- cugCCUGUAC--------CCGUUGGa-CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 133381 0.67 0.781817
Target:  5'- uGGCGG-CcgGGGCGgcggccgggGCCgagcgggcggucuugGCCGCGGAc -3'
miRNA:   3'- -CUGCCuGuaCCCGU---------UGGa--------------CGGCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.