miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 44837 0.67 0.752553
Target:  5'- --gGGACcgGGGCGAgCgggGUCGUGGAg -3'
miRNA:   3'- cugCCUGuaCCCGUUgGa--CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 69133 0.67 0.749663
Target:  5'- cGCGGGCA-GGGCGcgcgggugcucgacGCCgUGCCGCu-- -3'
miRNA:   3'- cUGCCUGUaCCCGU--------------UGG-ACGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 104129 0.67 0.743854
Target:  5'- uGCGcGACGU-GGCGGCCgaccgcggcuacgacGCCGCGGAg -3'
miRNA:   3'- cUGC-CUGUAcCCGUUGGa--------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 90825 0.67 0.742882
Target:  5'- --aGGugGUcacgcugaacagGGGC-GCCUGCCGCGGc -3'
miRNA:   3'- cugCCugUA------------CCCGuUGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 131741 0.67 0.733114
Target:  5'- uGGCGGGCccGGGCGaggcgACC-GUCGCGGu -3'
miRNA:   3'- -CUGCCUGuaCCCGU-----UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 92749 0.67 0.733114
Target:  5'- cGGCGcGGCAcGGGCAccugaGCgUGCUGCGGc -3'
miRNA:   3'- -CUGC-CUGUaCCCGU-----UGgACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 54130 0.67 0.733114
Target:  5'- uGCGGAC--GGGCucuGCCccggcggcGCCGCGGAg -3'
miRNA:   3'- cUGCCUGuaCCCGu--UGGa-------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 105217 0.67 0.733114
Target:  5'- aGGCGGACAcgcUGcGGCAgcgGCUgacgGCCGCcGAg -3'
miRNA:   3'- -CUGCCUGU---AC-CCGU---UGGa---CGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 82470 0.67 0.733114
Target:  5'- aGACGGGCggGGGCAccACCUGguaCG-AGAc -3'
miRNA:   3'- -CUGCCUGuaCCCGU--UGGACg--GCgUCU- -5'
29589 3' -57.7 NC_006151.1 + 84823 0.67 0.752553
Target:  5'- cGCGGACG-GGGCcGCgaGgUGCAGAu -3'
miRNA:   3'- cUGCCUGUaCCCGuUGgaCgGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 98416 0.67 0.762118
Target:  5'- aGACGGGCAccUGcgaGGCGGCCgUGCuCGCcGAg -3'
miRNA:   3'- -CUGCCUGU--AC---CCGUUGG-ACG-GCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 90649 0.67 0.780892
Target:  5'- cGAUGGGCGUguacaugcgcgGGGCGGCggGCCGCu-- -3'
miRNA:   3'- -CUGCCUGUA-----------CCCGUUGgaCGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 137858 0.67 0.780892
Target:  5'- cACGGGCGUguacgcgcacgGGcGCAGCCUGCgGCu-- -3'
miRNA:   3'- cUGCCUGUA-----------CC-CGUUGGACGgCGucu -5'
29589 3' -57.7 NC_006151.1 + 90760 0.67 0.780892
Target:  5'- cGGCGGGCAcgguggcgGGGuCGGCggGCgCGCAGAa -3'
miRNA:   3'- -CUGCCUGUa-------CCC-GUUGgaCG-GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 64502 0.67 0.779966
Target:  5'- cGCGGGCGgcGGGCGcgcgccgccaaagGCC-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUa-CCCGU-------------UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 50167 0.67 0.771567
Target:  5'- aGCGGACGaGcGCGGCCgGCCGCGc- -3'
miRNA:   3'- cUGCCUGUaCcCGUUGGaCGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 93442 0.67 0.771567
Target:  5'- gGGCGaGCggGGGUcGCC-GCCGCGGGg -3'
miRNA:   3'- -CUGCcUGuaCCCGuUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 65818 0.67 0.771567
Target:  5'- cGCGGugGaUGGGCGGCCgcGCCagcGCGGc -3'
miRNA:   3'- cUGCCugU-ACCCGUUGGa-CGG---CGUCu -5'
29589 3' -57.7 NC_006151.1 + 100175 0.67 0.771567
Target:  5'- --aGGACAUggccacccacacGGGCGACCUGCUGgAc- -3'
miRNA:   3'- cugCCUGUA------------CCCGUUGGACGGCgUcu -5'
29589 3' -57.7 NC_006151.1 + 132841 0.67 0.762118
Target:  5'- gGACGGcCAccacGGGCGGCCggcccgggGCCGCGc- -3'
miRNA:   3'- -CUGCCuGUa---CCCGUUGGa-------CGGCGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.