miRNA display CGI


Results 61 - 80 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 4096 0.69 0.642352
Target:  5'- uGCGGGCGacgaGGGCGacagaguccgcgGCCUGCCGCc-- -3'
miRNA:   3'- cUGCCUGUa---CCCGU------------UGGACGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 132648 0.69 0.642352
Target:  5'- -cCGGACcUGGGCcgccACCUcGuCCGCGGAg -3'
miRNA:   3'- cuGCCUGuACCCGu---UGGA-C-GGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 104580 0.69 0.642352
Target:  5'- cGCGGACGUGcugcaggccGGCGGCa-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUAC---------CCGUUGgaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 97372 0.69 0.65156
Target:  5'- cGGCGGGCGcggcggGGGCGucgGCCucguccgUGCCGUGGAu -3'
miRNA:   3'- -CUGCCUGUa-----CCCGU---UGG-------ACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 124363 0.69 0.652583
Target:  5'- cACGGACGUGauCGACC-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUACccGUUGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 34628 0.7 0.581071
Target:  5'- cGCGGGug-GGGCGACCgcggggGUCGCGGGa -3'
miRNA:   3'- cUGCCUguaCCCGUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 37969 0.7 0.560861
Target:  5'- uGGCGGACGccUGcGUccuGGCCUGCCGCGGc -3'
miRNA:   3'- -CUGCCUGU--ACcCG---UUGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 6117 0.7 0.560861
Target:  5'- --aGGACG-GGGCGGCCUcguggcuccgGCCGCGGc -3'
miRNA:   3'- cugCCUGUaCCCGUUGGA----------CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 133165 0.7 0.55885
Target:  5'- cGCGGGCGUGGGCcucGGCCacgcgucccacgGCCGCgcAGAa -3'
miRNA:   3'- cUGCCUGUACCCG---UUGGa-----------CGGCG--UCU- -5'
29589 3' -57.7 NC_006151.1 + 71097 0.7 0.588182
Target:  5'- cGCGGGCGcGGGCGccguGcgcuaccccuucuuCCUGCUGCAGAa -3'
miRNA:   3'- cUGCCUGUaCCCGU----U--------------GGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 27004 0.7 0.591234
Target:  5'- -uCGGGCGagagcUGGaGCAggGCCUGCCaGCAGGg -3'
miRNA:   3'- cuGCCUGU-----ACC-CGU--UGGACGG-CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 66126 0.7 0.601427
Target:  5'- cACaGACuccacccGGGCGGCCaGCCGCAGGu -3'
miRNA:   3'- cUGcCUGua-----CCCGUUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 106364 0.7 0.601427
Target:  5'- -cUGGACGcGGGCGcgcGCCcGCCGCGGc -3'
miRNA:   3'- cuGCCUGUaCCCGU---UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 81999 0.7 0.611643
Target:  5'- cGGCGGcCA-GGGCGGCCgcgugcGCCGCcGAc -3'
miRNA:   3'- -CUGCCuGUaCCCGUUGGa-----CGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 89522 0.7 0.611643
Target:  5'- aGCGGACGUGGuccgccucgaGCAgcGCCgagGCCGguGGa -3'
miRNA:   3'- cUGCCUGUACC----------CGU--UGGa--CGGCguCU- -5'
29589 3' -57.7 NC_006151.1 + 135918 0.71 0.521083
Target:  5'- cGGCGGuCGUGcGcGCGcUCUGCCGCGGGg -3'
miRNA:   3'- -CUGCCuGUAC-C-CGUuGGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 46951 0.71 0.529945
Target:  5'- cGCGGACugGGGCGACCcuguugcUGCUGCGGc -3'
miRNA:   3'- cUGCCUGuaCCCGUUGG-------ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 71574 0.71 0.540849
Target:  5'- gGACGGGC--GGGCAuCCU-CCGCGGGc -3'
miRNA:   3'- -CUGCCUGuaCCCGUuGGAcGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 5019 0.71 0.550828
Target:  5'- gGGCGGGCuccgGGGCcggGGCCggggagGCCGCGGc -3'
miRNA:   3'- -CUGCCUGua--CCCG---UUGGa-----CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 2108 0.71 0.521083
Target:  5'- aGCGGGCcgcgGGGcCGGCCgucgccGCCGCGGAc -3'
miRNA:   3'- cUGCCUGua--CCC-GUUGGa-----CGGCGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.