Results 81 - 94 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 658 | 0.71 | 0.550828 |
Target: 5'- gGGCGcGGCcgGGGCGGgCU-CCGCGGAu -3' miRNA: 3'- -CUGC-CUGuaCCCGUUgGAcGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 122343 | 0.71 | 0.521083 |
Target: 5'- --aGGACGUGGcCAagaACCUGCCGCAc- -3' miRNA: 3'- cugCCUGUACCcGU---UGGACGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 119283 | 0.72 | 0.473008 |
Target: 5'- aGACGGACAaggacgGGcGCGugCUGCUGCAc- -3' miRNA: 3'- -CUGCCUGUa-----CC-CGUugGACGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 130467 | 0.73 | 0.41844 |
Target: 5'- cGugGuGCA-GGGCGaugGCCUGCCGCAGc -3' miRNA: 3'- -CugCcUGUaCCCGU---UGGACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 4231 | 0.73 | 0.409722 |
Target: 5'- gGGCGGGCGcGGGCAGCCggaGCgGgCAGGg -3' miRNA: 3'- -CUGCCUGUaCCCGUUGGa--CGgC-GUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 89737 | 0.73 | 0.401118 |
Target: 5'- cGCGGugGUGGGCGagacgaGCUgguUGCCGCGGc -3' miRNA: 3'- cUGCCugUACCCGU------UGG---ACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 4777 | 0.73 | 0.401118 |
Target: 5'- aGACGGGCAcGGGC--CCgGCCGCGGc -3' miRNA: 3'- -CUGCCUGUaCCCGuuGGaCGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 123023 | 0.74 | 0.351978 |
Target: 5'- cGGCGGACgccguggcGUGGGCGgaccuGCCgGCCGCGGc -3' miRNA: 3'- -CUGCCUG--------UACCCGU-----UGGaCGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 98367 | 0.74 | 0.355118 |
Target: 5'- cGCGGGCucUGGGCGcgcgcgcugcgccugGCCUGCCGCGc- -3' miRNA: 3'- cUGCCUGu-ACCCGU---------------UGGACGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 120311 | 0.74 | 0.359071 |
Target: 5'- cGACGGGCucGGGCAGCCUcucggacGCCGCGc- -3' miRNA: 3'- -CUGCCUGuaCCCGUUGGA-------CGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 123471 | 0.75 | 0.336575 |
Target: 5'- uGCGGuggagaACGUGGGCcuCCUGCCGCAc- -3' miRNA: 3'- cUGCC------UGUACCCGuuGGACGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 141532 | 0.76 | 0.27994 |
Target: 5'- cGACGGACGUGaGCGAgCUGCUGCGcGAg -3' miRNA: 3'- -CUGCCUGUACcCGUUgGACGGCGU-CU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 33040 | 0.77 | 0.248549 |
Target: 5'- cGACGGGgAgggGGGgAugCUGCCGCGGGu -3' miRNA: 3'- -CUGCCUgUa--CCCgUugGACGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 138115 | 0.77 | 0.248549 |
Target: 5'- uGGCGGACAUGcugcGCGGCCUgGCCGUGGAc -3' miRNA: 3'- -CUGCCUGUACc---CGUUGGA-CGGCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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