miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 33040 0.77 0.248549
Target:  5'- cGACGGGgAgggGGGgAugCUGCCGCGGGu -3'
miRNA:   3'- -CUGCCUgUa--CCCgUugGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 138115 0.77 0.248549
Target:  5'- uGGCGGACAUGcugcGCGGCCUgGCCGUGGAc -3'
miRNA:   3'- -CUGCCUGUACc---CGUUGGA-CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 141532 0.76 0.27994
Target:  5'- cGACGGACGUGaGCGAgCUGCUGCGcGAg -3'
miRNA:   3'- -CUGCCUGUACcCGUUgGACGGCGU-CU- -5'
29589 3' -57.7 NC_006151.1 + 123471 0.75 0.336575
Target:  5'- uGCGGuggagaACGUGGGCcuCCUGCCGCAc- -3'
miRNA:   3'- cUGCC------UGUACCCGuuGGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 98367 0.74 0.355118
Target:  5'- cGCGGGCucUGGGCGcgcgcgcugcgccugGCCUGCCGCGc- -3'
miRNA:   3'- cUGCCUGu-ACCCGU---------------UGGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 120311 0.74 0.359071
Target:  5'- cGACGGGCucGGGCAGCCUcucggacGCCGCGc- -3'
miRNA:   3'- -CUGCCUGuaCCCGUUGGA-------CGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 123023 0.74 0.351978
Target:  5'- cGGCGGACgccguggcGUGGGCGgaccuGCCgGCCGCGGc -3'
miRNA:   3'- -CUGCCUG--------UACCCGU-----UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 4777 0.73 0.401118
Target:  5'- aGACGGGCAcGGGC--CCgGCCGCGGc -3'
miRNA:   3'- -CUGCCUGUaCCCGuuGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 89737 0.73 0.401118
Target:  5'- cGCGGugGUGGGCGagacgaGCUgguUGCCGCGGc -3'
miRNA:   3'- cUGCCugUACCCGU------UGG---ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 4231 0.73 0.409722
Target:  5'- gGGCGGGCGcGGGCAGCCggaGCgGgCAGGg -3'
miRNA:   3'- -CUGCCUGUaCCCGUUGGa--CGgC-GUCU- -5'
29589 3' -57.7 NC_006151.1 + 130467 0.73 0.41844
Target:  5'- cGugGuGCA-GGGCGaugGCCUGCCGCAGc -3'
miRNA:   3'- -CugCcUGUaCCCGU---UGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 119283 0.72 0.473008
Target:  5'- aGACGGACAaggacgGGcGCGugCUGCUGCAc- -3'
miRNA:   3'- -CUGCCUGUa-----CC-CGUugGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 658 0.71 0.550828
Target:  5'- gGGCGcGGCcgGGGCGGgCU-CCGCGGAu -3'
miRNA:   3'- -CUGC-CUGuaCCCGUUgGAcGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 71574 0.71 0.540849
Target:  5'- gGACGGGC--GGGCAuCCU-CCGCGGGc -3'
miRNA:   3'- -CUGCCUGuaCCCGUuGGAcGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 46951 0.71 0.529945
Target:  5'- cGCGGACugGGGCGACCcuguugcUGCUGCGGc -3'
miRNA:   3'- cUGCCUGuaCCCGUUGG-------ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 5019 0.71 0.550828
Target:  5'- gGGCGGGCuccgGGGCcggGGCCggggagGCCGCGGc -3'
miRNA:   3'- -CUGCCUGua--CCCG---UUGGa-----CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 2108 0.71 0.521083
Target:  5'- aGCGGGCcgcgGGGcCGGCCgucgccGCCGCGGAc -3'
miRNA:   3'- cUGCCUGua--CCC-GUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 122343 0.71 0.521083
Target:  5'- --aGGACGUGGcCAagaACCUGCCGCAc- -3'
miRNA:   3'- cugCCUGUACCcGU---UGGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 135918 0.71 0.521083
Target:  5'- cGGCGGuCGUGcGcGCGcUCUGCCGCGGGg -3'
miRNA:   3'- -CUGCCuGUAC-C-CGUuGGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 133165 0.7 0.55885
Target:  5'- cGCGGGCGUGGGCcucGGCCacgcgucccacgGCCGCgcAGAa -3'
miRNA:   3'- cUGCCUGUACCCG---UUGGa-----------CGGCG--UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.