miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 71097 0.7 0.588182
Target:  5'- cGCGGGCGcGGGCGccguGcgcuaccccuucuuCCUGCUGCAGAa -3'
miRNA:   3'- cUGCCUGUaCCCGU----U--------------GGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 89522 0.7 0.611643
Target:  5'- aGCGGACGUGGuccgccucgaGCAgcGCCgagGCCGguGGa -3'
miRNA:   3'- cUGCCUGUACC----------CGU--UGGa--CGGCguCU- -5'
29589 3' -57.7 NC_006151.1 + 81999 0.7 0.611643
Target:  5'- cGGCGGcCA-GGGCGGCCgcgugcGCCGCcGAc -3'
miRNA:   3'- -CUGCCuGUaCCCGUUGGa-----CGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 34628 0.7 0.581071
Target:  5'- cGCGGGug-GGGCGACCgcggggGUCGCGGGa -3'
miRNA:   3'- cUGCCUguaCCCGUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 106364 0.7 0.601427
Target:  5'- -cUGGACGcGGGCGcgcGCCcGCCGCGGc -3'
miRNA:   3'- cuGCCUGUaCCCGU---UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 133165 0.7 0.55885
Target:  5'- cGCGGGCGUGGGCcucGGCCacgcgucccacgGCCGCgcAGAa -3'
miRNA:   3'- cUGCCUGUACCCG---UUGGa-----------CGGCG--UCU- -5'
29589 3' -57.7 NC_006151.1 + 6117 0.7 0.560861
Target:  5'- --aGGACG-GGGCGGCCUcguggcuccgGCCGCGGc -3'
miRNA:   3'- cugCCUGUaCCCGUUGGA----------CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 37969 0.7 0.560861
Target:  5'- uGGCGGACGccUGcGUccuGGCCUGCCGCGGc -3'
miRNA:   3'- -CUGCCUGU--ACcCG---UUGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 27004 0.7 0.591234
Target:  5'- -uCGGGCGagagcUGGaGCAggGCCUGCCaGCAGGg -3'
miRNA:   3'- cuGCCUGU-----ACC-CGU--UGGACGG-CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 29582 0.69 0.621874
Target:  5'- gGACGGAUcgcGGCGGCUgcgGCCGCGGc -3'
miRNA:   3'- -CUGCCUGuacCCGUUGGa--CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 40552 0.69 0.632113
Target:  5'- cGGCGGugGUGgaagcggcggcGGCGGCC-GCgGCGGAg -3'
miRNA:   3'- -CUGCCugUAC-----------CCGUUGGaCGgCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 138178 0.69 0.632113
Target:  5'- uGGCGGACGUGgccauGGCGcCCgUGCUGCGGc -3'
miRNA:   3'- -CUGCCUGUAC-----CCGUuGG-ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 55891 0.69 0.632113
Target:  5'- cGGCGGACGUgcgccGGGCGACCgaGCgGCu-- -3'
miRNA:   3'- -CUGCCUGUA-----CCCGUUGGa-CGgCGucu -5'
29589 3' -57.7 NC_006151.1 + 118429 0.69 0.620851
Target:  5'- cGACGGGCGcgGaGGUgugcgcgcggcucGGCCUgGCCGCGGAc -3'
miRNA:   3'- -CUGCCUGUa-C-CCG-------------UUGGA-CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 104580 0.69 0.642352
Target:  5'- cGCGGACGUGcugcaggccGGCGGCa-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUAC---------CCGUUGgaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 124363 0.69 0.652583
Target:  5'- cACGGACGUGauCGACC-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUACccGUUGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 97372 0.69 0.65156
Target:  5'- cGGCGGGCGcggcggGGGCGucgGCCucguccgUGCCGUGGAu -3'
miRNA:   3'- -CUGCCUGUa-----CCCGU---UGG-------ACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 132648 0.69 0.642352
Target:  5'- -cCGGACcUGGGCcgccACCUcGuCCGCGGAg -3'
miRNA:   3'- cuGCCUGuACCCGu---UGGA-C-GGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 4096 0.69 0.642352
Target:  5'- uGCGGGCGacgaGGGCGacagaguccgcgGCCUGCCGCc-- -3'
miRNA:   3'- cUGCCUGUa---CCCGU------------UGGACGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 88058 0.68 0.672987
Target:  5'- aGACGGGCAgcugcgaGGGCAgGCCcucgagGCgGCAGGu -3'
miRNA:   3'- -CUGCCUGUa------CCCGU-UGGa-----CGgCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.