miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 93442 0.67 0.771567
Target:  5'- gGGCGaGCggGGGUcGCC-GCCGCGGGg -3'
miRNA:   3'- -CUGCcUGuaCCCGuUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 90760 0.67 0.780892
Target:  5'- cGGCGGGCAcgguggcgGGGuCGGCggGCgCGCAGAa -3'
miRNA:   3'- -CUGCCUGUa-------CCC-GUUGgaCG-GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 100175 0.67 0.771567
Target:  5'- --aGGACAUggccacccacacGGGCGACCUGCUGgAc- -3'
miRNA:   3'- cugCCUGUA------------CCCGUUGGACGGCgUcu -5'
29589 3' -57.7 NC_006151.1 + 45170 0.67 0.752553
Target:  5'- gGACGGACG-GGGUGGCgUGcCCGCc-- -3'
miRNA:   3'- -CUGCCUGUaCCCGUUGgAC-GGCGucu -5'
29589 3' -57.7 NC_006151.1 + 44837 0.67 0.752553
Target:  5'- --gGGACcgGGGCGAgCgggGUCGUGGAg -3'
miRNA:   3'- cugCCUGuaCCCGUUgGa--CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 69133 0.67 0.749663
Target:  5'- cGCGGGCA-GGGCGcgcgggugcucgacGCCgUGCCGCu-- -3'
miRNA:   3'- cUGCCUGUaCCCGU--------------UGG-ACGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 104129 0.67 0.743854
Target:  5'- uGCGcGACGU-GGCGGCCgaccgcggcuacgacGCCGCGGAg -3'
miRNA:   3'- cUGC-CUGUAcCCGUUGGa--------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 131741 0.67 0.733114
Target:  5'- uGGCGGGCccGGGCGaggcgACC-GUCGCGGu -3'
miRNA:   3'- -CUGCCUGuaCCCGU-----UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 92749 0.67 0.733114
Target:  5'- cGGCGcGGCAcGGGCAccugaGCgUGCUGCGGc -3'
miRNA:   3'- -CUGC-CUGUaCCCGU-----UGgACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 54130 0.67 0.733114
Target:  5'- uGCGGAC--GGGCucuGCCccggcggcGCCGCGGAg -3'
miRNA:   3'- cUGCCUGuaCCCGu--UGGa-------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 105217 0.67 0.733114
Target:  5'- aGGCGGACAcgcUGcGGCAgcgGCUgacgGCCGCcGAg -3'
miRNA:   3'- -CUGCCUGU---AC-CCGU---UGGa---CGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 132841 0.67 0.762118
Target:  5'- gGACGGcCAccacGGGCGGCCggcccgggGCCGCGc- -3'
miRNA:   3'- -CUGCCuGUa---CCCGUUGGa-------CGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 98416 0.67 0.762118
Target:  5'- aGACGGGCAccUGcgaGGCGGCCgUGCuCGCcGAg -3'
miRNA:   3'- -CUGCCUGU--AC---CCGUUGG-ACG-GCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 84823 0.67 0.752553
Target:  5'- cGCGGACG-GGGCcGCgaGgUGCAGAu -3'
miRNA:   3'- cUGCCUGUaCCCGuUGgaCgGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 90825 0.67 0.742882
Target:  5'- --aGGugGUcacgcugaacagGGGC-GCCUGCCGCGGc -3'
miRNA:   3'- cugCCugUA------------CCCGuUGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 85928 0.66 0.816768
Target:  5'- gGAgGGGC-UGGGCcugCUGCUGCAGc -3'
miRNA:   3'- -CUgCCUGuACCCGuugGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 4566 0.66 0.816768
Target:  5'- uGCGGcaGCGgcgGGGUcACgCUGCCGguGAu -3'
miRNA:   3'- cUGCC--UGUa--CCCGuUG-GACGGCguCU- -5'
29589 3' -57.7 NC_006151.1 + 101461 0.66 0.80803
Target:  5'- -gUGGGCcUGGGCcucuACC-GCCGCGGc -3'
miRNA:   3'- cuGCCUGuACCCGu---UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 106090 0.66 0.799132
Target:  5'- cGACugGGACuc-GGCGGCCaaggccGCCGCGGAg -3'
miRNA:   3'- -CUG--CCUGuacCCGUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 99106 0.66 0.799132
Target:  5'- cACGGACcaGGGCGugCUGgCGCugcuGGAc -3'
miRNA:   3'- cUGCCUGuaCCCGUugGACgGCG----UCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.