Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 20124 | 0.68 | 0.672987 |
Target: 5'- cGACgGGGCugggGGGCGGgC-GCCGCGGGg -3' miRNA: 3'- -CUG-CCUGua--CCCGUUgGaCGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 10200 | 0.68 | 0.672987 |
Target: 5'- cGCGG-CGcGGGCGGCg-GCUGCAGAg -3' miRNA: 3'- cUGCCuGUaCCCGUUGgaCGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 116982 | 0.68 | 0.672987 |
Target: 5'- -cUGGACGUGaGGC-GCUggUGCCGCAGc -3' miRNA: 3'- cuGCCUGUAC-CCGuUGG--ACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 73223 | 0.68 | 0.683144 |
Target: 5'- cGCGGGCAccugGGGCAGCaucugGCCGaAGAc -3' miRNA: 3'- cUGCCUGUa---CCCGUUGga---CGGCgUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 85176 | 0.68 | 0.683144 |
Target: 5'- cGCGGGCGccgccgccccgcUGGGCAucgcggACCUGCUggaGCGGGu -3' miRNA: 3'- cUGCCUGU------------ACCCGU------UGGACGG---CGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 136995 | 0.68 | 0.700308 |
Target: 5'- cGGCGGGCGcgcgcgcacggcgcUGGGCGcccugcucgGCCUGCCGgAc- -3' miRNA: 3'- -CUGCCUGU--------------ACCCGU---------UGGACGGCgUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 19688 | 0.68 | 0.703322 |
Target: 5'- aGAUGGGCcgGGGguGCCUcCCuCAGGg -3' miRNA: 3'- -CUGCCUGuaCCCguUGGAcGGcGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 127454 | 0.68 | 0.703322 |
Target: 5'- cGGCGGcGCAcgaagcgcUGGGCGGCgCggaacgaGCCGCGGAc -3' miRNA: 3'- -CUGCC-UGU--------ACCCGUUG-Ga------CGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 3372 | 0.68 | 0.713325 |
Target: 5'- gGGCGGGCAguaggcggcgaGGGCcGCCUcggaggGCCGCGGc -3' miRNA: 3'- -CUGCCUGUa----------CCCGuUGGA------CGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 114088 | 0.68 | 0.713325 |
Target: 5'- -uCGGGCAUGGGCuacuACCUggGCCucgGCGGc -3' miRNA: 3'- cuGCCUGUACCCGu---UGGA--CGG---CGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 104477 | 0.68 | 0.713325 |
Target: 5'- gGGCGGACAUGGcGCAcgugccccGCCUGgccaaguaCGUGGAc -3' miRNA: 3'- -CUGCCUGUACC-CGU--------UGGACg-------GCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 730 | 0.68 | 0.723259 |
Target: 5'- cGCGGGCggGGGCuuCCgcuCCGCGGc -3' miRNA: 3'- cUGCCUGuaCCCGuuGGac-GGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 89574 | 0.68 | 0.723259 |
Target: 5'- uGAUGGGCAcgcccaUGGGCucGCCggcgGCCGUgaGGAc -3' miRNA: 3'- -CUGCCUGU------ACCCGu-UGGa---CGGCG--UCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 131741 | 0.67 | 0.733114 |
Target: 5'- uGGCGGGCccGGGCGaggcgACC-GUCGCGGu -3' miRNA: 3'- -CUGCCUGuaCCCGU-----UGGaCGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 92749 | 0.67 | 0.733114 |
Target: 5'- cGGCGcGGCAcGGGCAccugaGCgUGCUGCGGc -3' miRNA: 3'- -CUGC-CUGUaCCCGU-----UGgACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 105217 | 0.67 | 0.733114 |
Target: 5'- aGGCGGACAcgcUGcGGCAgcgGCUgacgGCCGCcGAg -3' miRNA: 3'- -CUGCCUGU---AC-CCGU---UGGa---CGGCGuCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 82470 | 0.67 | 0.733114 |
Target: 5'- aGACGGGCggGGGCAccACCUGguaCG-AGAc -3' miRNA: 3'- -CUGCCUGuaCCCGU--UGGACg--GCgUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 54130 | 0.67 | 0.733114 |
Target: 5'- uGCGGAC--GGGCucuGCCccggcggcGCCGCGGAg -3' miRNA: 3'- cUGCCUGuaCCCGu--UGGa-------CGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 90825 | 0.67 | 0.742882 |
Target: 5'- --aGGugGUcacgcugaacagGGGC-GCCUGCCGCGGc -3' miRNA: 3'- cugCCugUA------------CCCGuUGGACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 104129 | 0.67 | 0.743854 |
Target: 5'- uGCGcGACGU-GGCGGCCgaccgcggcuacgacGCCGCGGAg -3' miRNA: 3'- cUGC-CUGUAcCCGUUGGa--------------CGGCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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