Results 61 - 80 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 69133 | 0.67 | 0.749663 |
Target: 5'- cGCGGGCA-GGGCGcgcgggugcucgacGCCgUGCCGCu-- -3' miRNA: 3'- cUGCCUGUaCCCGU--------------UGG-ACGGCGucu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 45170 | 0.67 | 0.752553 |
Target: 5'- gGACGGACG-GGGUGGCgUGcCCGCc-- -3' miRNA: 3'- -CUGCCUGUaCCCGUUGgAC-GGCGucu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 44837 | 0.67 | 0.752553 |
Target: 5'- --gGGACcgGGGCGAgCgggGUCGUGGAg -3' miRNA: 3'- cugCCUGuaCCCGUUgGa--CGGCGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 84823 | 0.67 | 0.752553 |
Target: 5'- cGCGGACG-GGGCcGCgaGgUGCAGAu -3' miRNA: 3'- cUGCCUGUaCCCGuUGgaCgGCGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 98416 | 0.67 | 0.762118 |
Target: 5'- aGACGGGCAccUGcgaGGCGGCCgUGCuCGCcGAg -3' miRNA: 3'- -CUGCCUGU--AC---CCGUUGG-ACG-GCGuCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 132841 | 0.67 | 0.762118 |
Target: 5'- gGACGGcCAccacGGGCGGCCggcccgggGCCGCGc- -3' miRNA: 3'- -CUGCCuGUa---CCCGUUGGa-------CGGCGUcu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 100175 | 0.67 | 0.771567 |
Target: 5'- --aGGACAUggccacccacacGGGCGACCUGCUGgAc- -3' miRNA: 3'- cugCCUGUA------------CCCGUUGGACGGCgUcu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 65818 | 0.67 | 0.771567 |
Target: 5'- cGCGGugGaUGGGCGGCCgcGCCagcGCGGc -3' miRNA: 3'- cUGCCugU-ACCCGUUGGa-CGG---CGUCu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 93442 | 0.67 | 0.771567 |
Target: 5'- gGGCGaGCggGGGUcGCC-GCCGCGGGg -3' miRNA: 3'- -CUGCcUGuaCCCGuUGGaCGGCGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 50167 | 0.67 | 0.771567 |
Target: 5'- aGCGGACGaGcGCGGCCgGCCGCGc- -3' miRNA: 3'- cUGCCUGUaCcCGUUGGaCGGCGUcu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 64502 | 0.67 | 0.779966 |
Target: 5'- cGCGGGCGgcGGGCGcgcgccgccaaagGCC-GCCGCGGc -3' miRNA: 3'- cUGCCUGUa-CCCGU-------------UGGaCGGCGUCu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 90760 | 0.67 | 0.780892 |
Target: 5'- cGGCGGGCAcgguggcgGGGuCGGCggGCgCGCAGAa -3' miRNA: 3'- -CUGCCUGUa-------CCC-GUUGgaCG-GCGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 90649 | 0.67 | 0.780892 |
Target: 5'- cGAUGGGCGUguacaugcgcgGGGCGGCggGCCGCu-- -3' miRNA: 3'- -CUGCCUGUA-----------CCCGUUGgaCGGCGucu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 137858 | 0.67 | 0.780892 |
Target: 5'- cACGGGCGUguacgcgcacgGGcGCAGCCUGCgGCu-- -3' miRNA: 3'- cUGCCUGUA-----------CC-CGUUGGACGgCGucu -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 133381 | 0.67 | 0.781817 |
Target: 5'- uGGCGG-CcgGGGCGgcggccgggGCCgagcgggcggucuugGCCGCGGAc -3' miRNA: 3'- -CUGCCuGuaCCCGU---------UGGa--------------CGGCGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 4690 | 0.66 | 0.790083 |
Target: 5'- --aGGACAUGgccucgccGGCGGCCccGCUGUAGAu -3' miRNA: 3'- cugCCUGUAC--------CCGUUGGa-CGGCGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 55491 | 0.66 | 0.790083 |
Target: 5'- cGCGGAC--GGcCAGCC-GCCGCGGGa -3' miRNA: 3'- cUGCCUGuaCCcGUUGGaCGGCGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 124138 | 0.66 | 0.798234 |
Target: 5'- cACGGugGUGcGGCuggagcccgagcaGGCCUGCCccgaguacucGCAGGg -3' miRNA: 3'- cUGCCugUAC-CCG-------------UUGGACGG----------CGUCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 135175 | 0.66 | 0.799132 |
Target: 5'- gGACGGGCGccGGCuGCC-GCCGCcGGg -3' miRNA: 3'- -CUGCCUGUacCCGuUGGaCGGCGuCU- -5' |
|||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 99106 | 0.66 | 0.799132 |
Target: 5'- cACGGACcaGGGCGugCUGgCGCugcuGGAc -3' miRNA: 3'- cUGCCUGuaCCCGUugGACgGCG----UCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home