miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 131741 0.67 0.733114
Target:  5'- uGGCGGGCccGGGCGaggcgACC-GUCGCGGu -3'
miRNA:   3'- -CUGCCUGuaCCCGU-----UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 89574 0.68 0.723259
Target:  5'- uGAUGGGCAcgcccaUGGGCucGCCggcgGCCGUgaGGAc -3'
miRNA:   3'- -CUGCCUGU------ACCCGu-UGGa---CGGCG--UCU- -5'
29589 3' -57.7 NC_006151.1 + 730 0.68 0.723259
Target:  5'- cGCGGGCggGGGCuuCCgcuCCGCGGc -3'
miRNA:   3'- cUGCCUGuaCCCGuuGGac-GGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 114088 0.68 0.713325
Target:  5'- -uCGGGCAUGGGCuacuACCUggGCCucgGCGGc -3'
miRNA:   3'- cuGCCUGUACCCGu---UGGA--CGG---CGUCu -5'
29589 3' -57.7 NC_006151.1 + 104477 0.68 0.713325
Target:  5'- gGGCGGACAUGGcGCAcgugccccGCCUGgccaaguaCGUGGAc -3'
miRNA:   3'- -CUGCCUGUACC-CGU--------UGGACg-------GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 3372 0.68 0.713325
Target:  5'- gGGCGGGCAguaggcggcgaGGGCcGCCUcggaggGCCGCGGc -3'
miRNA:   3'- -CUGCCUGUa----------CCCGuUGGA------CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 19688 0.68 0.703322
Target:  5'- aGAUGGGCcgGGGguGCCUcCCuCAGGg -3'
miRNA:   3'- -CUGCCUGuaCCCguUGGAcGGcGUCU- -5'
29589 3' -57.7 NC_006151.1 + 127454 0.68 0.703322
Target:  5'- cGGCGGcGCAcgaagcgcUGGGCGGCgCggaacgaGCCGCGGAc -3'
miRNA:   3'- -CUGCC-UGU--------ACCCGUUG-Ga------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 136995 0.68 0.700308
Target:  5'- cGGCGGGCGcgcgcgcacggcgcUGGGCGcccugcucgGCCUGCCGgAc- -3'
miRNA:   3'- -CUGCCUGU--------------ACCCGU---------UGGACGGCgUcu -5'
29589 3' -57.7 NC_006151.1 + 85176 0.68 0.683144
Target:  5'- cGCGGGCGccgccgccccgcUGGGCAucgcggACCUGCUggaGCGGGu -3'
miRNA:   3'- cUGCCUGU------------ACCCGU------UGGACGG---CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 73223 0.68 0.683144
Target:  5'- cGCGGGCAccugGGGCAGCaucugGCCGaAGAc -3'
miRNA:   3'- cUGCCUGUa---CCCGUUGga---CGGCgUCU- -5'
29589 3' -57.7 NC_006151.1 + 88058 0.68 0.672987
Target:  5'- aGACGGGCAgcugcgaGGGCAgGCCcucgagGCgGCAGGu -3'
miRNA:   3'- -CUGCCUGUa------CCCGU-UGGa-----CGgCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 20124 0.68 0.672987
Target:  5'- cGACgGGGCugggGGGCGGgC-GCCGCGGGg -3'
miRNA:   3'- -CUG-CCUGua--CCCGUUgGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 116982 0.68 0.672987
Target:  5'- -cUGGACGUGaGGC-GCUggUGCCGCAGc -3'
miRNA:   3'- cuGCCUGUAC-CCGuUGG--ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 10200 0.68 0.672987
Target:  5'- cGCGG-CGcGGGCGGCg-GCUGCAGAg -3'
miRNA:   3'- cUGCCuGUaCCCGUUGgaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 124363 0.69 0.652583
Target:  5'- cACGGACGUGauCGACC-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUACccGUUGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 97372 0.69 0.65156
Target:  5'- cGGCGGGCGcggcggGGGCGucgGCCucguccgUGCCGUGGAu -3'
miRNA:   3'- -CUGCCUGUa-----CCCGU---UGG-------ACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 104580 0.69 0.642352
Target:  5'- cGCGGACGUGcugcaggccGGCGGCa-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUAC---------CCGUUGgaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 132648 0.69 0.642352
Target:  5'- -cCGGACcUGGGCcgccACCUcGuCCGCGGAg -3'
miRNA:   3'- cuGCCUGuACCCGu---UGGA-C-GGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 4096 0.69 0.642352
Target:  5'- uGCGGGCGacgaGGGCGacagaguccgcgGCCUGCCGCc-- -3'
miRNA:   3'- cUGCCUGUa---CCCGU------------UGGACGGCGucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.