Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 40552 | 0.69 | 0.632113 |
Target: 5'- cGGCGGugGUGgaagcggcggcGGCGGCC-GCgGCGGAg -3' miRNA: 3'- -CUGCCugUAC-----------CCGUUGGaCGgCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 138178 | 0.69 | 0.632113 |
Target: 5'- uGGCGGACGUGgccauGGCGcCCgUGCUGCGGc -3' miRNA: 3'- -CUGCCUGUAC-----CCGUuGG-ACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 55891 | 0.69 | 0.632113 |
Target: 5'- cGGCGGACGUgcgccGGGCGACCgaGCgGCu-- -3' miRNA: 3'- -CUGCCUGUA-----CCCGUUGGa-CGgCGucu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 29582 | 0.69 | 0.621874 |
Target: 5'- gGACGGAUcgcGGCGGCUgcgGCCGCGGc -3' miRNA: 3'- -CUGCCUGuacCCGUUGGa--CGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 118429 | 0.69 | 0.620851 |
Target: 5'- cGACGGGCGcgGaGGUgugcgcgcggcucGGCCUgGCCGCGGAc -3' miRNA: 3'- -CUGCCUGUa-C-CCG-------------UUGGA-CGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 89522 | 0.7 | 0.611643 |
Target: 5'- aGCGGACGUGGuccgccucgaGCAgcGCCgagGCCGguGGa -3' miRNA: 3'- cUGCCUGUACC----------CGU--UGGa--CGGCguCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 81999 | 0.7 | 0.611643 |
Target: 5'- cGGCGGcCA-GGGCGGCCgcgugcGCCGCcGAc -3' miRNA: 3'- -CUGCCuGUaCCCGUUGGa-----CGGCGuCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 106364 | 0.7 | 0.601427 |
Target: 5'- -cUGGACGcGGGCGcgcGCCcGCCGCGGc -3' miRNA: 3'- cuGCCUGUaCCCGU---UGGaCGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 66126 | 0.7 | 0.601427 |
Target: 5'- cACaGACuccacccGGGCGGCCaGCCGCAGGu -3' miRNA: 3'- cUGcCUGua-----CCCGUUGGaCGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 27004 | 0.7 | 0.591234 |
Target: 5'- -uCGGGCGagagcUGGaGCAggGCCUGCCaGCAGGg -3' miRNA: 3'- cuGCCUGU-----ACC-CGU--UGGACGG-CGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 71097 | 0.7 | 0.588182 |
Target: 5'- cGCGGGCGcGGGCGccguGcgcuaccccuucuuCCUGCUGCAGAa -3' miRNA: 3'- cUGCCUGUaCCCGU----U--------------GGACGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 34628 | 0.7 | 0.581071 |
Target: 5'- cGCGGGug-GGGCGACCgcggggGUCGCGGGa -3' miRNA: 3'- cUGCCUguaCCCGUUGGa-----CGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 37969 | 0.7 | 0.560861 |
Target: 5'- uGGCGGACGccUGcGUccuGGCCUGCCGCGGc -3' miRNA: 3'- -CUGCCUGU--ACcCG---UUGGACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 6117 | 0.7 | 0.560861 |
Target: 5'- --aGGACG-GGGCGGCCUcguggcuccgGCCGCGGc -3' miRNA: 3'- cugCCUGUaCCCGUUGGA----------CGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 133165 | 0.7 | 0.55885 |
Target: 5'- cGCGGGCGUGGGCcucGGCCacgcgucccacgGCCGCgcAGAa -3' miRNA: 3'- cUGCCUGUACCCG---UUGGa-----------CGGCG--UCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 658 | 0.71 | 0.550828 |
Target: 5'- gGGCGcGGCcgGGGCGGgCU-CCGCGGAu -3' miRNA: 3'- -CUGC-CUGuaCCCGUUgGAcGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 5019 | 0.71 | 0.550828 |
Target: 5'- gGGCGGGCuccgGGGCcggGGCCggggagGCCGCGGc -3' miRNA: 3'- -CUGCCUGua--CCCG---UUGGa-----CGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 71574 | 0.71 | 0.540849 |
Target: 5'- gGACGGGC--GGGCAuCCU-CCGCGGGc -3' miRNA: 3'- -CUGCCUGuaCCCGUuGGAcGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 46951 | 0.71 | 0.529945 |
Target: 5'- cGCGGACugGGGCGACCcuguugcUGCUGCGGc -3' miRNA: 3'- cUGCCUGuaCCCGUUGG-------ACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 2108 | 0.71 | 0.521083 |
Target: 5'- aGCGGGCcgcgGGGcCGGCCgucgccGCCGCGGAc -3' miRNA: 3'- cUGCCUGua--CCC-GUUGGa-----CGGCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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