miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 658 0.71 0.550828
Target:  5'- gGGCGcGGCcgGGGCGGgCU-CCGCGGAu -3'
miRNA:   3'- -CUGC-CUGuaCCCGUUgGAcGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 730 0.68 0.723259
Target:  5'- cGCGGGCggGGGCuuCCgcuCCGCGGc -3'
miRNA:   3'- cUGCCUGuaCCCGuuGGac-GGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 2108 0.71 0.521083
Target:  5'- aGCGGGCcgcgGGGcCGGCCgucgccGCCGCGGAc -3'
miRNA:   3'- cUGCCUGua--CCC-GUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 3372 0.68 0.713325
Target:  5'- gGGCGGGCAguaggcggcgaGGGCcGCCUcggaggGCCGCGGc -3'
miRNA:   3'- -CUGCCUGUa----------CCCGuUGGA------CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 3724 0.66 0.833733
Target:  5'- -uCGGGCGcUGGGUccgGGCCgGCgGCGGGg -3'
miRNA:   3'- cuGCCUGU-ACCCG---UUGGaCGgCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 4096 0.69 0.642352
Target:  5'- uGCGGGCGacgaGGGCGacagaguccgcgGCCUGCCGCc-- -3'
miRNA:   3'- cUGCCUGUa---CCCGU------------UGGACGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 4231 0.73 0.409722
Target:  5'- gGGCGGGCGcGGGCAGCCggaGCgGgCAGGg -3'
miRNA:   3'- -CUGCCUGUaCCCGUUGGa--CGgC-GUCU- -5'
29589 3' -57.7 NC_006151.1 + 4566 0.66 0.816768
Target:  5'- uGCGGcaGCGgcgGGGUcACgCUGCCGguGAu -3'
miRNA:   3'- cUGCC--UGUa--CCCGuUG-GACGGCguCU- -5'
29589 3' -57.7 NC_006151.1 + 4690 0.66 0.790083
Target:  5'- --aGGACAUGgccucgccGGCGGCCccGCUGUAGAu -3'
miRNA:   3'- cugCCUGUAC--------CCGUUGGa-CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 4777 0.73 0.401118
Target:  5'- aGACGGGCAcGGGC--CCgGCCGCGGc -3'
miRNA:   3'- -CUGCCUGUaCCCGuuGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 5019 0.71 0.550828
Target:  5'- gGGCGGGCuccgGGGCcggGGCCggggagGCCGCGGc -3'
miRNA:   3'- -CUGCCUGua--CCCG---UUGGa-----CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 5616 0.66 0.80803
Target:  5'- cGGCGGAgG-GGGCGccGCC-GCCGCcGGg -3'
miRNA:   3'- -CUGCCUgUaCCCGU--UGGaCGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 6117 0.7 0.560861
Target:  5'- --aGGACG-GGGCGGCCUcguggcuccgGCCGCGGc -3'
miRNA:   3'- cugCCUGUaCCCGUUGGA----------CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 10200 0.68 0.672987
Target:  5'- cGCGG-CGcGGGCGGCg-GCUGCAGAg -3'
miRNA:   3'- cUGCCuGUaCCCGUUGgaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 19688 0.68 0.703322
Target:  5'- aGAUGGGCcgGGGguGCCUcCCuCAGGg -3'
miRNA:   3'- -CUGCCUGuaCCCguUGGAcGGcGUCU- -5'
29589 3' -57.7 NC_006151.1 + 20124 0.68 0.672987
Target:  5'- cGACgGGGCugggGGGCGGgC-GCCGCGGGg -3'
miRNA:   3'- -CUG-CCUGua--CCCGUUgGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 27004 0.7 0.591234
Target:  5'- -uCGGGCGagagcUGGaGCAggGCCUGCCaGCAGGg -3'
miRNA:   3'- cuGCCUGU-----ACC-CGU--UGGACGG-CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 29582 0.69 0.621874
Target:  5'- gGACGGAUcgcGGCGGCUgcgGCCGCGGc -3'
miRNA:   3'- -CUGCCUGuacCCGUUGGa--CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 33040 0.77 0.248549
Target:  5'- cGACGGGgAgggGGGgAugCUGCCGCGGGu -3'
miRNA:   3'- -CUGCCUgUa--CCCgUugGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 33091 0.66 0.811545
Target:  5'- gGGCGGGCGguggaggGGGgAgaggaaggucugggcGCgUGCCGCGGGc -3'
miRNA:   3'- -CUGCCUGUa------CCCgU---------------UGgACGGCGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.