miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 82470 0.67 0.733114
Target:  5'- aGACGGGCggGGGCAccACCUGguaCG-AGAc -3'
miRNA:   3'- -CUGCCUGuaCCCGU--UGGACg--GCgUCU- -5'
29589 3' -57.7 NC_006151.1 + 82652 0.66 0.821931
Target:  5'- uGCGG-CGaGGGCGGCCcacccugcggcgcGCCGCGGGc -3'
miRNA:   3'- cUGCCuGUaCCCGUUGGa------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 84823 0.67 0.752553
Target:  5'- cGCGGACG-GGGCcGCgaGgUGCAGAu -3'
miRNA:   3'- cUGCCUGUaCCCGuUGgaCgGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 85176 0.68 0.683144
Target:  5'- cGCGGGCGccgccgccccgcUGGGCAucgcggACCUGCUggaGCGGGu -3'
miRNA:   3'- cUGCCUGU------------ACCCGU------UGGACGG---CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 85928 0.66 0.816768
Target:  5'- gGAgGGGC-UGGGCcugCUGCUGCAGc -3'
miRNA:   3'- -CUgCCUGuACCCGuugGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 88058 0.68 0.672987
Target:  5'- aGACGGGCAgcugcgaGGGCAgGCCcucgagGCgGCAGGu -3'
miRNA:   3'- -CUGCCUGUa------CCCGU-UGGa-----CGgCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 89522 0.7 0.611643
Target:  5'- aGCGGACGUGGuccgccucgaGCAgcGCCgagGCCGguGGa -3'
miRNA:   3'- cUGCCUGUACC----------CGU--UGGa--CGGCguCU- -5'
29589 3' -57.7 NC_006151.1 + 89574 0.68 0.723259
Target:  5'- uGAUGGGCAcgcccaUGGGCucGCCggcgGCCGUgaGGAc -3'
miRNA:   3'- -CUGCCUGU------ACCCGu-UGGa---CGGCG--UCU- -5'
29589 3' -57.7 NC_006151.1 + 89737 0.73 0.401118
Target:  5'- cGCGGugGUGGGCGagacgaGCUgguUGCCGCGGc -3'
miRNA:   3'- cUGCCugUACCCGU------UGG---ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 90649 0.67 0.780892
Target:  5'- cGAUGGGCGUguacaugcgcgGGGCGGCggGCCGCu-- -3'
miRNA:   3'- -CUGCCUGUA-----------CCCGUUGgaCGGCGucu -5'
29589 3' -57.7 NC_006151.1 + 90760 0.67 0.780892
Target:  5'- cGGCGGGCAcgguggcgGGGuCGGCggGCgCGCAGAa -3'
miRNA:   3'- -CUGCCUGUa-------CCC-GUUGgaCG-GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 90825 0.67 0.742882
Target:  5'- --aGGugGUcacgcugaacagGGGC-GCCUGCCGCGGc -3'
miRNA:   3'- cugCCugUA------------CCCGuUGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 92749 0.67 0.733114
Target:  5'- cGGCGcGGCAcGGGCAccugaGCgUGCUGCGGc -3'
miRNA:   3'- -CUGC-CUGUaCCCGU-----UGgACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 93442 0.67 0.771567
Target:  5'- gGGCGaGCggGGGUcGCC-GCCGCGGGg -3'
miRNA:   3'- -CUGCcUGuaCCCGuUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 97372 0.69 0.65156
Target:  5'- cGGCGGGCGcggcggGGGCGucgGCCucguccgUGCCGUGGAu -3'
miRNA:   3'- -CUGCCUGUa-----CCCGU---UGG-------ACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 98367 0.74 0.355118
Target:  5'- cGCGGGCucUGGGCGcgcgcgcugcgccugGCCUGCCGCGc- -3'
miRNA:   3'- cUGCCUGu-ACCCGU---------------UGGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 98416 0.67 0.762118
Target:  5'- aGACGGGCAccUGcgaGGCGGCCgUGCuCGCcGAg -3'
miRNA:   3'- -CUGCCUGU--AC---CCGUUGG-ACG-GCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 99106 0.66 0.799132
Target:  5'- cACGGACcaGGGCGugCUGgCGCugcuGGAc -3'
miRNA:   3'- cUGCCUGuaCCCGUugGACgGCG----UCU- -5'
29589 3' -57.7 NC_006151.1 + 99547 0.66 0.825338
Target:  5'- cACGGAgcaCGUGGGCGcggcgcgcgcgGCgCUGCUGCGcGAg -3'
miRNA:   3'- cUGCCU---GUACCCGU-----------UG-GACGGCGU-CU- -5'
29589 3' -57.7 NC_006151.1 + 100175 0.67 0.771567
Target:  5'- --aGGACAUggccacccacacGGGCGACCUGCUGgAc- -3'
miRNA:   3'- cugCCUGUA------------CCCGUUGGACGGCgUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.