miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 100352 0.66 0.825338
Target:  5'- uGGCGGACgucguggacgccGUGGGCG-CCUuCCGCGc- -3'
miRNA:   3'- -CUGCCUG------------UACCCGUuGGAcGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 101461 0.66 0.80803
Target:  5'- -gUGGGCcUGGGCcucuACC-GCCGCGGc -3'
miRNA:   3'- cuGCCUGuACCCGu---UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 104129 0.67 0.743854
Target:  5'- uGCGcGACGU-GGCGGCCgaccgcggcuacgacGCCGCGGAg -3'
miRNA:   3'- cUGC-CUGUAcCCGUUGGa--------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 104477 0.68 0.713325
Target:  5'- gGGCGGACAUGGcGCAcgugccccGCCUGgccaaguaCGUGGAc -3'
miRNA:   3'- -CUGCCUGUACC-CGU--------UGGACg-------GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 104580 0.69 0.642352
Target:  5'- cGCGGACGUGcugcaggccGGCGGCa-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUAC---------CCGUUGgaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 105217 0.67 0.733114
Target:  5'- aGGCGGACAcgcUGcGGCAgcgGCUgacgGCCGCcGAg -3'
miRNA:   3'- -CUGCCUGU---AC-CCGU---UGGa---CGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 106090 0.66 0.799132
Target:  5'- cGACugGGACuc-GGCGGCCaaggccGCCGCGGAg -3'
miRNA:   3'- -CUG--CCUGuacCCGUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 106364 0.7 0.601427
Target:  5'- -cUGGACGcGGGCGcgcGCCcGCCGCGGc -3'
miRNA:   3'- cuGCCUGUaCCCGU---UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 114088 0.68 0.713325
Target:  5'- -uCGGGCAUGGGCuacuACCUggGCCucgGCGGc -3'
miRNA:   3'- cuGCCUGUACCCGu---UGGA--CGG---CGUCu -5'
29589 3' -57.7 NC_006151.1 + 116982 0.68 0.672987
Target:  5'- -cUGGACGUGaGGC-GCUggUGCCGCAGc -3'
miRNA:   3'- cuGCCUGUAC-CCGuUGG--ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 118429 0.69 0.620851
Target:  5'- cGACGGGCGcgGaGGUgugcgcgcggcucGGCCUgGCCGCGGAc -3'
miRNA:   3'- -CUGCCUGUa-C-CCG-------------UUGGA-CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 119283 0.72 0.473008
Target:  5'- aGACGGACAaggacgGGcGCGugCUGCUGCAc- -3'
miRNA:   3'- -CUGCCUGUa-----CC-CGUugGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 120311 0.74 0.359071
Target:  5'- cGACGGGCucGGGCAGCCUcucggacGCCGCGc- -3'
miRNA:   3'- -CUGCCUGuaCCCGUUGGA-------CGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 121059 0.66 0.80803
Target:  5'- -cCGcGCGUGGGCuucACgUGCuCGCAGAc -3'
miRNA:   3'- cuGCcUGUACCCGu--UGgACG-GCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 122343 0.71 0.521083
Target:  5'- --aGGACGUGGcCAagaACCUGCCGCAc- -3'
miRNA:   3'- cugCCUGUACCcGU---UGGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 122772 0.66 0.799132
Target:  5'- cGACGGGCugcucGUGGGCGGCUg--CGCGGc -3'
miRNA:   3'- -CUGCCUG-----UACCCGUUGGacgGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 123023 0.74 0.351978
Target:  5'- cGGCGGACgccguggcGUGGGCGgaccuGCCgGCCGCGGc -3'
miRNA:   3'- -CUGCCUG--------UACCCGU-----UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 123471 0.75 0.336575
Target:  5'- uGCGGuggagaACGUGGGCcuCCUGCCGCAc- -3'
miRNA:   3'- cUGCC------UGUACCCGuuGGACGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 124138 0.66 0.798234
Target:  5'- cACGGugGUGcGGCuggagcccgagcaGGCCUGCCccgaguacucGCAGGg -3'
miRNA:   3'- cUGCCugUAC-CCG-------------UUGGACGG----------CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 124363 0.69 0.652583
Target:  5'- cACGGACGUGauCGACC-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUACccGUUGGaCGGCGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.