miRNA display CGI


Results 81 - 94 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 127454 0.68 0.703322
Target:  5'- cGGCGGcGCAcgaagcgcUGGGCGGCgCggaacgaGCCGCGGAc -3'
miRNA:   3'- -CUGCC-UGU--------ACCCGUUG-Ga------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 130467 0.73 0.41844
Target:  5'- cGugGuGCA-GGGCGaugGCCUGCCGCAGc -3'
miRNA:   3'- -CugCcUGUaCCCGU---UGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 131741 0.67 0.733114
Target:  5'- uGGCGGGCccGGGCGaggcgACC-GUCGCGGu -3'
miRNA:   3'- -CUGCCUGuaCCCGU-----UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 132648 0.69 0.642352
Target:  5'- -cCGGACcUGGGCcgccACCUcGuCCGCGGAg -3'
miRNA:   3'- cuGCCUGuACCCGu---UGGA-C-GGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 132841 0.67 0.762118
Target:  5'- gGACGGcCAccacGGGCGGCCggcccgggGCCGCGc- -3'
miRNA:   3'- -CUGCCuGUa---CCCGUUGGa-------CGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 133165 0.7 0.55885
Target:  5'- cGCGGGCGUGGGCcucGGCCacgcgucccacgGCCGCgcAGAa -3'
miRNA:   3'- cUGCCUGUACCCG---UUGGa-----------CGGCG--UCU- -5'
29589 3' -57.7 NC_006151.1 + 133381 0.67 0.781817
Target:  5'- uGGCGG-CcgGGGCGgcggccgggGCCgagcgggcggucuugGCCGCGGAc -3'
miRNA:   3'- -CUGCCuGuaCCCGU---------UGGa--------------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 135175 0.66 0.799132
Target:  5'- gGACGGGCGccGGCuGCC-GCCGCcGGg -3'
miRNA:   3'- -CUGCCUGUacCCGuUGGaCGGCGuCU- -5'
29589 3' -57.7 NC_006151.1 + 135918 0.71 0.521083
Target:  5'- cGGCGGuCGUGcGcGCGcUCUGCCGCGGGg -3'
miRNA:   3'- -CUGCCuGUAC-C-CGUuGGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 136995 0.68 0.700308
Target:  5'- cGGCGGGCGcgcgcgcacggcgcUGGGCGcccugcucgGCCUGCCGgAc- -3'
miRNA:   3'- -CUGCCUGU--------------ACCCGU---------UGGACGGCgUcu -5'
29589 3' -57.7 NC_006151.1 + 137858 0.67 0.780892
Target:  5'- cACGGGCGUguacgcgcacgGGcGCAGCCUGCgGCu-- -3'
miRNA:   3'- cUGCCUGUA-----------CC-CGUUGGACGgCGucu -5'
29589 3' -57.7 NC_006151.1 + 138115 0.77 0.248549
Target:  5'- uGGCGGACAUGcugcGCGGCCUgGCCGUGGAc -3'
miRNA:   3'- -CUGCCUGUACc---CGUUGGA-CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 138178 0.69 0.632113
Target:  5'- uGGCGGACGUGgccauGGCGcCCgUGCUGCGGc -3'
miRNA:   3'- -CUGCCUGUAC-----CCGUuGG-ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 141532 0.76 0.27994
Target:  5'- cGACGGACGUGaGCGAgCUGCUGCGcGAg -3'
miRNA:   3'- -CUGCCUGUACcCGUUgGACGGCGU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.