Results 21 - 40 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29589 | 3' | -57.7 | NC_006151.1 | + | 121059 | 0.66 | 0.80803 |
Target: 5'- -cCGcGCGUGGGCuucACgUGCuCGCAGAc -3' miRNA: 3'- cuGCcUGUACCCGu--UGgACG-GCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 120311 | 0.74 | 0.359071 |
Target: 5'- cGACGGGCucGGGCAGCCUcucggacGCCGCGc- -3' miRNA: 3'- -CUGCCUGuaCCCGUUGGA-------CGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 119283 | 0.72 | 0.473008 |
Target: 5'- aGACGGACAaggacgGGcGCGugCUGCUGCAc- -3' miRNA: 3'- -CUGCCUGUa-----CC-CGUugGACGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 118429 | 0.69 | 0.620851 |
Target: 5'- cGACGGGCGcgGaGGUgugcgcgcggcucGGCCUgGCCGCGGAc -3' miRNA: 3'- -CUGCCUGUa-C-CCG-------------UUGGA-CGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 116982 | 0.68 | 0.672987 |
Target: 5'- -cUGGACGUGaGGC-GCUggUGCCGCAGc -3' miRNA: 3'- cuGCCUGUAC-CCGuUGG--ACGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 114088 | 0.68 | 0.713325 |
Target: 5'- -uCGGGCAUGGGCuacuACCUggGCCucgGCGGc -3' miRNA: 3'- cuGCCUGUACCCGu---UGGA--CGG---CGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 106364 | 0.7 | 0.601427 |
Target: 5'- -cUGGACGcGGGCGcgcGCCcGCCGCGGc -3' miRNA: 3'- cuGCCUGUaCCCGU---UGGaCGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 106090 | 0.66 | 0.799132 |
Target: 5'- cGACugGGACuc-GGCGGCCaaggccGCCGCGGAg -3' miRNA: 3'- -CUG--CCUGuacCCGUUGGa-----CGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 105217 | 0.67 | 0.733114 |
Target: 5'- aGGCGGACAcgcUGcGGCAgcgGCUgacgGCCGCcGAg -3' miRNA: 3'- -CUGCCUGU---AC-CCGU---UGGa---CGGCGuCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 104580 | 0.69 | 0.642352 |
Target: 5'- cGCGGACGUGcugcaggccGGCGGCa-GCCGCGGc -3' miRNA: 3'- cUGCCUGUAC---------CCGUUGgaCGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 104477 | 0.68 | 0.713325 |
Target: 5'- gGGCGGACAUGGcGCAcgugccccGCCUGgccaaguaCGUGGAc -3' miRNA: 3'- -CUGCCUGUACC-CGU--------UGGACg-------GCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 104129 | 0.67 | 0.743854 |
Target: 5'- uGCGcGACGU-GGCGGCCgaccgcggcuacgacGCCGCGGAg -3' miRNA: 3'- cUGC-CUGUAcCCGUUGGa--------------CGGCGUCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 101461 | 0.66 | 0.80803 |
Target: 5'- -gUGGGCcUGGGCcucuACC-GCCGCGGc -3' miRNA: 3'- cuGCCUGuACCCGu---UGGaCGGCGUCu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 100352 | 0.66 | 0.825338 |
Target: 5'- uGGCGGACgucguggacgccGUGGGCG-CCUuCCGCGc- -3' miRNA: 3'- -CUGCCUG------------UACCCGUuGGAcGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 100175 | 0.67 | 0.771567 |
Target: 5'- --aGGACAUggccacccacacGGGCGACCUGCUGgAc- -3' miRNA: 3'- cugCCUGUA------------CCCGUUGGACGGCgUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 99547 | 0.66 | 0.825338 |
Target: 5'- cACGGAgcaCGUGGGCGcggcgcgcgcgGCgCUGCUGCGcGAg -3' miRNA: 3'- cUGCCU---GUACCCGU-----------UG-GACGGCGU-CU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 99106 | 0.66 | 0.799132 |
Target: 5'- cACGGACcaGGGCGugCUGgCGCugcuGGAc -3' miRNA: 3'- cUGCCUGuaCCCGUugGACgGCG----UCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 98416 | 0.67 | 0.762118 |
Target: 5'- aGACGGGCAccUGcgaGGCGGCCgUGCuCGCcGAg -3' miRNA: 3'- -CUGCCUGU--AC---CCGUUGG-ACG-GCGuCU- -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 98367 | 0.74 | 0.355118 |
Target: 5'- cGCGGGCucUGGGCGcgcgcgcugcgccugGCCUGCCGCGc- -3' miRNA: 3'- cUGCCUGu-ACCCGU---------------UGGACGGCGUcu -5' |
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29589 | 3' | -57.7 | NC_006151.1 | + | 97372 | 0.69 | 0.65156 |
Target: 5'- cGGCGGGCGcggcggGGGCGucgGCCucguccgUGCCGUGGAu -3' miRNA: 3'- -CUGCCUGUa-----CCCGU---UGG-------ACGGCGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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