miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29589 3' -57.7 NC_006151.1 + 66126 0.7 0.601427
Target:  5'- cACaGACuccacccGGGCGGCCaGCCGCAGGu -3'
miRNA:   3'- cUGcCUGua-----CCCGUUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 65818 0.67 0.771567
Target:  5'- cGCGGugGaUGGGCGGCCgcGCCagcGCGGc -3'
miRNA:   3'- cUGCCugU-ACCCGUUGGa-CGG---CGUCu -5'
29589 3' -57.7 NC_006151.1 + 64502 0.67 0.779966
Target:  5'- cGCGGGCGgcGGGCGcgcgccgccaaagGCC-GCCGCGGc -3'
miRNA:   3'- cUGCCUGUa-CCCGU-------------UGGaCGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 55891 0.69 0.632113
Target:  5'- cGGCGGACGUgcgccGGGCGACCgaGCgGCu-- -3'
miRNA:   3'- -CUGCCUGUA-----CCCGUUGGa-CGgCGucu -5'
29589 3' -57.7 NC_006151.1 + 55491 0.66 0.790083
Target:  5'- cGCGGAC--GGcCAGCC-GCCGCGGGa -3'
miRNA:   3'- cUGCCUGuaCCcGUUGGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 54130 0.67 0.733114
Target:  5'- uGCGGAC--GGGCucuGCCccggcggcGCCGCGGAg -3'
miRNA:   3'- cUGCCUGuaCCCGu--UGGa-------CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 50167 0.67 0.771567
Target:  5'- aGCGGACGaGcGCGGCCgGCCGCGc- -3'
miRNA:   3'- cUGCCUGUaCcCGUUGGaCGGCGUcu -5'
29589 3' -57.7 NC_006151.1 + 46951 0.71 0.529945
Target:  5'- cGCGGACugGGGCGACCcuguugcUGCUGCGGc -3'
miRNA:   3'- cUGCCUGuaCCCGUUGG-------ACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 45170 0.67 0.752553
Target:  5'- gGACGGACG-GGGUGGCgUGcCCGCc-- -3'
miRNA:   3'- -CUGCCUGUaCCCGUUGgAC-GGCGucu -5'
29589 3' -57.7 NC_006151.1 + 44837 0.67 0.752553
Target:  5'- --gGGACcgGGGCGAgCgggGUCGUGGAg -3'
miRNA:   3'- cugCCUGuaCCCGUUgGa--CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 40552 0.69 0.632113
Target:  5'- cGGCGGugGUGgaagcggcggcGGCGGCC-GCgGCGGAg -3'
miRNA:   3'- -CUGCCugUAC-----------CCGUUGGaCGgCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 37969 0.7 0.560861
Target:  5'- uGGCGGACGccUGcGUccuGGCCUGCCGCGGc -3'
miRNA:   3'- -CUGCCUGU--ACcCG---UUGGACGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 36016 0.66 0.825338
Target:  5'- cGACGGcgGCAgccaGGGCucCCggcGCCGCGGc -3'
miRNA:   3'- -CUGCC--UGUa---CCCGuuGGa--CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 34628 0.7 0.581071
Target:  5'- cGCGGGug-GGGCGACCgcggggGUCGCGGGa -3'
miRNA:   3'- cUGCCUguaCCCGUUGGa-----CGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 33091 0.66 0.811545
Target:  5'- gGGCGGGCGguggaggGGGgAgaggaaggucugggcGCgUGCCGCGGGc -3'
miRNA:   3'- -CUGCCUGUa------CCCgU---------------UGgACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 33040 0.77 0.248549
Target:  5'- cGACGGGgAgggGGGgAugCUGCCGCGGGu -3'
miRNA:   3'- -CUGCCUgUa--CCCgUugGACGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 29582 0.69 0.621874
Target:  5'- gGACGGAUcgcGGCGGCUgcgGCCGCGGc -3'
miRNA:   3'- -CUGCCUGuacCCGUUGGa--CGGCGUCu -5'
29589 3' -57.7 NC_006151.1 + 27004 0.7 0.591234
Target:  5'- -uCGGGCGagagcUGGaGCAggGCCUGCCaGCAGGg -3'
miRNA:   3'- cuGCCUGU-----ACC-CGU--UGGACGG-CGUCU- -5'
29589 3' -57.7 NC_006151.1 + 20124 0.68 0.672987
Target:  5'- cGACgGGGCugggGGGCGGgC-GCCGCGGGg -3'
miRNA:   3'- -CUG-CCUGua--CCCGUUgGaCGGCGUCU- -5'
29589 3' -57.7 NC_006151.1 + 19688 0.68 0.703322
Target:  5'- aGAUGGGCcgGGGguGCCUcCCuCAGGg -3'
miRNA:   3'- -CUGCCUGuaCCCguUGGAcGGcGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.